| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197119633
Identifier: 197119633
GI number: 197119633
Start: 3758867
End: 3760057
Strand: Direct
Name: 197119633
Synonym: Gbem_3267
Alternate gene names: NA
Gene position: 3758867-3760057 (Clockwise)
Preceding gene: 197119614
Following gene: 197119635
Centisome position: 81.45
GC content: 61.04
Gene sequence:
>1191_bases ATGGGCATCCTCGCCAACACAGTAAGCGTCTGCCATTTCAAGGTCCAGGGAGAACTCCCGACCCAGGACCTCTACACCTG GGTCACCAAACAACTGGCGGCGAACCGCTTCAATCCGATCGACCAGGGAAGCGAAGAAATGTCGATCGGCTGGGTCCACC TGGACGACCCGAAAGCAAGCGACTTCGAGACCCCCGCGGCCTGCTGCCGCGAGCACTACCTCATGTTCACCCTGCGCCGC GACAAGCGCTCGGTCCCCTCGGCCATCCTGAAGGCACACTTGGAGAAGGCGCAGGACGAGTTCCTCGCGGAGAACCCCGG CTTCACCAAGGTCCCCAAGCAGAAGCGGGAGGACCTGAAGGAAGCGGTGCAGGCGATGCTCCTTTCGCAGACGCTCCCGA CCCCGGCCACCTACGACGCTGTGTGGGACACCAGAAGCGGCATCCTCACCTTCACCTCGCTTTCCCCGAAGGTCATCGAA CTCTTCGAGGAGCAGTTCAAGAAGACCTTCGAAGGGCTTCGCGTCTCCGCGTTCCACCCCTACGCCCGCGCCGAGAACGT TCTGGACGAAGGGAACCTGGTGCTCCTCAAAAAGGCCAACAAGGCCGGCGGCGACAACTATTTGGAGCTGATCAAGGAGA ACCAGTGGCTGGGCACGGACTTCATGCTCTGGCTCATGTACCAGACCATGAACGAGGCCTCCGAGTACAGCGTCAACCAG GAAGGTATCCTGCTGGCGAAGGAACCGTTCGTGGCCTACCTGGACGACCGCGTGGTGCTGTTAGGCTCCGGCGAAAACGG CGCCCAGAAGATCACGGTCGCAGGGCCGCAGGACCACTTCAACGAGGTGAGAAGCGCGCTATTGAACAAGAAGCAGATCA CCGAGGCGACGCTGCACCTTGAGACCGGCGACGACCACTGGAAGCTGACGCTCAAGGGCGAGCTCTTCCACCTGGCGTCC TTCAAGTCGCCGGCGGTAAAGCTGGAAAAGGACAGCAGCGTGGACGAGGCGATGGAGCGGGAGGCGGTTTTCTTCGAGAG GATGATGCTACTGGAGAAAGGGACCCAGCTTTTCGATTCGGTGTTCGCCACCTTCCTGCAGTTAAGGCTCGGCAGCGAGT GGGTCGAGCAGGAGAAGGCGATCCAGAAGTGGCTCAACGTCTGCAGCTTCTGCAACGGGTCGCTGGCGTAG
Upstream 100 bases:
>100_bases TTGGCCTTTTAGTTTTGGCTTGCCCGCAACCGGCAAAAGGTGTATCCATGCTGTCCCGCTAAAGCGGACTAGATAAACGC ACAATCCGAAGGAGAAGAAG
Downstream 100 bases:
>100_bases AGGCGGGTGTGAGGGGACTGGCTCCGCAAGGTGCCTGTCCCCCTTGCCTCCAGGTTTCCCCCCTTCGGTGGCCTAGACGT CCCCTCCCCCGGAGGGGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 396; Mature: 395
Protein sequence:
>396_residues MGILANTVSVCHFKVQGELPTQDLYTWVTKQLAANRFNPIDQGSEEMSIGWVHLDDPKASDFETPAACCREHYLMFTLRR DKRSVPSAILKAHLEKAQDEFLAENPGFTKVPKQKREDLKEAVQAMLLSQTLPTPATYDAVWDTRSGILTFTSLSPKVIE LFEEQFKKTFEGLRVSAFHPYARAENVLDEGNLVLLKKANKAGGDNYLELIKENQWLGTDFMLWLMYQTMNEASEYSVNQ EGILLAKEPFVAYLDDRVVLLGSGENGAQKITVAGPQDHFNEVRSALLNKKQITEATLHLETGDDHWKLTLKGELFHLAS FKSPAVKLEKDSSVDEAMEREAVFFERMMLLEKGTQLFDSVFATFLQLRLGSEWVEQEKAIQKWLNVCSFCNGSLA
Sequences:
>Translated_396_residues MGILANTVSVCHFKVQGELPTQDLYTWVTKQLAANRFNPIDQGSEEMSIGWVHLDDPKASDFETPAACCREHYLMFTLRR DKRSVPSAILKAHLEKAQDEFLAENPGFTKVPKQKREDLKEAVQAMLLSQTLPTPATYDAVWDTRSGILTFTSLSPKVIE LFEEQFKKTFEGLRVSAFHPYARAENVLDEGNLVLLKKANKAGGDNYLELIKENQWLGTDFMLWLMYQTMNEASEYSVNQ EGILLAKEPFVAYLDDRVVLLGSGENGAQKITVAGPQDHFNEVRSALLNKKQITEATLHLETGDDHWKLTLKGELFHLAS FKSPAVKLEKDSSVDEAMEREAVFFERMMLLEKGTQLFDSVFATFLQLRLGSEWVEQEKAIQKWLNVCSFCNGSLA >Mature_395_residues GILANTVSVCHFKVQGELPTQDLYTWVTKQLAANRFNPIDQGSEEMSIGWVHLDDPKASDFETPAACCREHYLMFTLRRD KRSVPSAILKAHLEKAQDEFLAENPGFTKVPKQKREDLKEAVQAMLLSQTLPTPATYDAVWDTRSGILTFTSLSPKVIEL FEEQFKKTFEGLRVSAFHPYARAENVLDEGNLVLLKKANKAGGDNYLELIKENQWLGTDFMLWLMYQTMNEASEYSVNQE GILLAKEPFVAYLDDRVVLLGSGENGAQKITVAGPQDHFNEVRSALLNKKQITEATLHLETGDDHWKLTLKGELFHLASF KSPAVKLEKDSSVDEAMEREAVFFERMMLLEKGTQLFDSVFATFLQLRLGSEWVEQEKAIQKWLNVCSFCNGSLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44842; Mature: 44710
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGILANTVSVCHFKVQGELPTQDLYTWVTKQLAANRFNPIDQGSEEMSIGWVHLDDPKAS CCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCC DFETPAACCREHYLMFTLRRDKRSVPSAILKAHLEKAQDEFLAENPGFTKVPKQKREDLK CCCCHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH EAVQAMLLSQTLPTPATYDAVWDTRSGILTFTSLSPKVIELFEEQFKKTFEGLRVSAFHP HHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECC YARAENVLDEGNLVLLKKANKAGGDNYLELIKENQWLGTDFMLWLMYQTMNEASEYSVNQ HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC EGILLAKEPFVAYLDDRVVLLGSGENGAQKITVAGPQDHFNEVRSALLNKKQITEATLHL CCEEEECCCCEEEECCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHCHHHHHEEEEEE ETGDDHWKLTLKGELFHLASFKSPAVKLEKDSSVDEAMEREAVFFERMMLLEKGTQLFDS ECCCCEEEEEEECCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VFATFLQLRLGSEWVEQEKAIQKWLNVCSFCNGSLA HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure GILANTVSVCHFKVQGELPTQDLYTWVTKQLAANRFNPIDQGSEEMSIGWVHLDDPKAS CCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCC DFETPAACCREHYLMFTLRRDKRSVPSAILKAHLEKAQDEFLAENPGFTKVPKQKREDLK CCCCHHHHHHHHHEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH EAVQAMLLSQTLPTPATYDAVWDTRSGILTFTSLSPKVIELFEEQFKKTFEGLRVSAFHP HHHHHHHHHHCCCCCCCCHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECC YARAENVLDEGNLVLLKKANKAGGDNYLELIKENQWLGTDFMLWLMYQTMNEASEYSVNQ HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCC EGILLAKEPFVAYLDDRVVLLGSGENGAQKITVAGPQDHFNEVRSALLNKKQITEATLHL CCEEEECCCCEEEECCEEEEEECCCCCCEEEEEECCHHHHHHHHHHHHCHHHHHEEEEEE ETGDDHWKLTLKGELFHLASFKSPAVKLEKDSSVDEAMEREAVFFERMMLLEKGTQLFDS ECCCCEEEEEEECCEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH VFATFLQLRLGSEWVEQEKAIQKWLNVCSFCNGSLA HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA