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The map label for this gene is ydcN [C]

Identifier: 197119614

GI number: 197119614

Start: 3741695

End: 3742027

Strand: Direct

Name: ydcN [C]

Synonym: Gbem_3248

Alternate gene names: 197119614

Gene position: 3741695-3742027 (Clockwise)

Preceding gene: 308535359

Following gene: 197119633

Centisome position: 81.07

GC content: 51.35

Gene sequence:

>333_bases
ATGAAAAACCCGGTAGCGATTAGACAACTTTTAGGGGATAACGTTCGGACGCTAAGAAAAGTGAGGGGTTGGAGCCAAGA
AGAATTAGGGGAGCATGCCGATTTAAGCTATAAGTTCGTAGGGGAGATTGAAAGGGGAACCGGGAATCCGAGCCTGGATT
CCCTGGTTGGCATTGCGAACGCACTGACCGTACCTATTGCTGAGCTTTTCCTACATCGGGGCCTTCTGGTGCTGAGTGAC
ACAGATGTCGCCGATGTCGAGACCTCTATGGCTGTGCTGAACAGGGTACTTGGAAACGCCAGAGCAGACATTCCGCAACG
GCAAAAAGCGTGA

Upstream 100 bases:

>100_bases
CATCAACGCCACAACTTAGCACCTATATGTGGCAAAACGACTAGACCTTAGCACATATGGAGGGTTTTCCGCCAGAGATA
AGGCACATATAATTCCCACC

Downstream 100 bases:

>100_bases
TAGCCCCCTATTCCCCCCCAGGTTTAAACGAATCCTGATCACGCAGAACCTCCTTCAGGGCAACAACCTCCTCCCTGCGC
TGAGGGACAAATTTGTCCCT

Product: helix-turn-helix DNA-binding protein, XRE family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MKNPVAIRQLLGDNVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIANALTVPIAELFLHRGLLVLSD
TDVADVETSMAVLNRVLGNARADIPQRQKA

Sequences:

>Translated_110_residues
MKNPVAIRQLLGDNVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIANALTVPIAELFLHRGLLVLSD
TDVADVETSMAVLNRVLGNARADIPQRQKA
>Mature_110_residues
MKNPVAIRQLLGDNVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIANALTVPIAELFLHRGLLVLSD
TDVADVETSMAVLNRVLGNARADIPQRQKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12018; Mature: 12018

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNPVAIRQLLGDNVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIAN
CCCHHHHHHHHCCHHHHHHHHHCCCHHHCCCCCCCCHHHHCCHHCCCCCCCHHHHHHHHH
ALTVPIAELFLHRGLLVLSDTDVADVETSMAVLNRVLGNARADIPQRQKA
HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKNPVAIRQLLGDNVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIAN
CCCHHHHHHHHCCHHHHHHHHHCCCHHHCCCCCCCCHHHHCCHHCCCCCCCHHHHHHHHH
ALTVPIAELFLHRGLLVLSDTDVADVETSMAVLNRVLGNARADIPQRQKA
HHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA