Definition Geobacter bemidjiensis Bem chromosome, complete genome.
Accession NC_011146
Length 4,615,150

Click here to switch to the map view.

The map label for this gene is 197119603

Identifier: 197119603

GI number: 197119603

Start: 3728428

End: 3728862

Strand: Direct

Name: 197119603

Synonym: Gbem_3237

Alternate gene names: NA

Gene position: 3728428-3728862 (Clockwise)

Preceding gene: 197119601

Following gene: 308535359

Centisome position: 80.79

GC content: 52.87

Gene sequence:

>435_bases
ATGAAAGTAGAGATGGATAAGAAACAGATTTTGGAGTTCATTAACGCAAATCCCATTTTCCACATGGCGACCGTCGACGG
CGACACCCCTCACGTGCGTGGGATGCTTTTGTTCAGGGCCGACGACGAAGGCATCGTCTTCAATACCGGCAAGATCAAGG
ACCTATACCGGCAGCTGGGCGTAAACCCCAAAGTTGAAATGTGTTTCACCAACGGGATCTTCGAAAACCTGATCCAAGTG
AGGGTGACCGGAATAGTCGAGGCGCTGGAGGACCTGGAACTGAAGAAGGAGATAGTGCAAAAGCGCGATTTCCTGAAGCC
GTGGATAGACAAGGTGGGGTACGAGCAGTTGGCCGTGTACAGGTTGAGAAACGGCGTGGCGACCGTCTGGACCATGGCCA
CCAACACCGAGCCCAAAGAGTTCATCCAGCTGTAG

Upstream 100 bases:

>100_bases
GATTAGTTGTATATATTCACTTGGCAGTGCAGCAAAGATCAAGTTTCAGCGTCGCGACGAAGGAGGCCGCTGCGTTGGAA
CTGCAGATAAGGAGGCAGCT

Downstream 100 bases:

>100_bases
ATAAAAGAGCACTCAGGAACGAAATGGCCGCCCTGGAGCGGCCTTTTTTTTAACTACCACCCTGTTTCCCTACCTCATAC
CGCAGTTCAACCATGCCGGT

Product: pyridoxamine 5'-phosphate oxidase-like FMN-binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MKVEMDKKQILEFINANPIFHMATVDGDTPHVRGMLLFRADDEGIVFNTGKIKDLYRQLGVNPKVEMCFTNGIFENLIQV
RVTGIVEALEDLELKKEIVQKRDFLKPWIDKVGYEQLAVYRLRNGVATVWTMATNTEPKEFIQL

Sequences:

>Translated_144_residues
MKVEMDKKQILEFINANPIFHMATVDGDTPHVRGMLLFRADDEGIVFNTGKIKDLYRQLGVNPKVEMCFTNGIFENLIQV
RVTGIVEALEDLELKKEIVQKRDFLKPWIDKVGYEQLAVYRLRNGVATVWTMATNTEPKEFIQL
>Mature_144_residues
MKVEMDKKQILEFINANPIFHMATVDGDTPHVRGMLLFRADDEGIVFNTGKIKDLYRQLGVNPKVEMCFTNGIFENLIQV
RVTGIVEALEDLELKKEIVQKRDFLKPWIDKVGYEQLAVYRLRNGVATVWTMATNTEPKEFIQL

Specific function: Unknown

COG id: COG5015

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16631; Mature: 16631

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVEMDKKQILEFINANPIFHMATVDGDTPHVRGMLLFRADDEGIVFNTGKIKDLYRQLG
CCCCCCHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEECCCCEEEECCHHHHHHHHHC
VNPKVEMCFTNGIFENLIQVRVTGIVEALEDLELKKEIVQKRDFLKPWIDKVGYEQLAVY
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RLRNGVATVWTMATNTEPKEFIQL
HHHCCCEEEEEEECCCCHHHHHCC
>Mature Secondary Structure
MKVEMDKKQILEFINANPIFHMATVDGDTPHVRGMLLFRADDEGIVFNTGKIKDLYRQLG
CCCCCCHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEEEECCCCEEEECCHHHHHHHHHC
VNPKVEMCFTNGIFENLIQVRVTGIVEALEDLELKKEIVQKRDFLKPWIDKVGYEQLAVY
CCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RLRNGVATVWTMATNTEPKEFIQL
HHHCCCEEEEEEECCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA