| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197117088
Identifier: 197117088
GI number: 197117088
Start: 820369
End: 820944
Strand: Reverse
Name: 197117088
Synonym: Gbem_0692
Alternate gene names: NA
Gene position: 820944-820369 (Counterclockwise)
Preceding gene: 197117089
Following gene: 197117087
Centisome position: 17.79
GC content: 61.11
Gene sequence:
>576_bases ATGAGTAATAAACCGACCAGGGAGACGACCTGGGAACTAATCAAAGAGTACCTGCCAAGTGACCAGATGCAGAGGCATTC GCTGGCGGTCGAAGCCGTGATGCGGCACCTGGCTAAGAAGTACGGGGAAGACGAGGAGATGTGGGGGGTGATCGGGCTGG CGCATGACGTCGATTACGAGCGGTATCCGGACCAGCACTGCCACCGGGCCCCGGAGATCCTGAAGGAAGCGGGGTGGCCC GAAGAATACATCCGCGCCGTCGTCTCCCACGGTTGGGGGATCTGCAGCGATGTCGAACCGCTCTCCCGGTTGGAGAAGAC CCTTTTCACCATCGACGAATTGACCGGCCTCGTGGCAGCCTCAGCCTTGGTGCGGCCGTCCAAGAGCATCCTGGACCTCC CGGTGAAGAGCGTCACCAAGAAATGGAAGGACAAGGCATTTGCCGCCGGCGCCGACCGGTCGGTCATCGAAAAGGGTGCC GCCATGCTCGGCGTGGAACTTCCCGAGTTGATCGCCGACACCATCGACGGGATGCGTGCCGAGGCCGAAGCCATCGGACT TAAAGGGAACCTGTAG
Upstream 100 bases:
>100_bases CCCTGGAGCATTGACACCTCATCCGTTGTTGGCTACAGTCGCGTCCGTCGCACGCATTTCTTTGTCTTTGTCTAAATCGA TGAAAGCGGAGGGAAGGCCT
Downstream 100 bases:
>100_bases CGCCCCGAAAAGGAGACAGAGATGAGTCCATCGTTTCGTCCGCGCGGACCTAAGAGCGTCCCGCCCAAGAGCGCCGAGGA GATAGACGAGTTGGTCCGCA
Product: metal-dependent phosphoesterase
Products: NA
Alternate protein names: Metal Dependent Phophohydrolase; HDIG Domain-Containing Protein; HDIG Domain Protein; Hydrolase; Hdig Domain Protein; HD Superfamily Hydrolase; HDIG-Domain-Containing Protein; Hydrolase Family Protein; Domain HDIG Protein; Phosphohydrolase; HAD-Superfamily Hydrolase; Metal-Dependent Phosphoesterase; HD Domain Protein; Lysyl-TRNA Synthetase
Number of amino acids: Translated: 191; Mature: 190
Protein sequence:
>191_residues MSNKPTRETTWELIKEYLPSDQMQRHSLAVEAVMRHLAKKYGEDEEMWGVIGLAHDVDYERYPDQHCHRAPEILKEAGWP EEYIRAVVSHGWGICSDVEPLSRLEKTLFTIDELTGLVAASALVRPSKSILDLPVKSVTKKWKDKAFAAGADRSVIEKGA AMLGVELPELIADTIDGMRAEAEAIGLKGNL
Sequences:
>Translated_191_residues MSNKPTRETTWELIKEYLPSDQMQRHSLAVEAVMRHLAKKYGEDEEMWGVIGLAHDVDYERYPDQHCHRAPEILKEAGWP EEYIRAVVSHGWGICSDVEPLSRLEKTLFTIDELTGLVAASALVRPSKSILDLPVKSVTKKWKDKAFAAGADRSVIEKGA AMLGVELPELIADTIDGMRAEAEAIGLKGNL >Mature_190_residues SNKPTRETTWELIKEYLPSDQMQRHSLAVEAVMRHLAKKYGEDEEMWGVIGLAHDVDYERYPDQHCHRAPEILKEAGWPE EYIRAVVSHGWGICSDVEPLSRLEKTLFTIDELTGLVAASALVRPSKSILDLPVKSVTKKWKDKAFAAGADRSVIEKGAA MLGVELPELIADTIDGMRAEAEAIGLKGNL
Specific function: Unknown
COG id: COG2316
COG function: function code R; Predicted hydrolase (HD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21296; Mature: 21164
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNKPTRETTWELIKEYLPSDQMQRHSLAVEAVMRHLAKKYGEDEEMWGVIGLAHDVDYE CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHH RYPDQHCHRAPEILKEAGWPEEYIRAVVSHGWGICSDVEPLSRLEKTLFTIDELTGLVAA CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH SALVRPSKSILDLPVKSVTKKWKDKAFAAGADRSVIEKGAAMLGVELPELIADTIDGMRA HHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH EAEAIGLKGNL HHHHHCCCCCC >Mature Secondary Structure SNKPTRETTWELIKEYLPSDQMQRHSLAVEAVMRHLAKKYGEDEEMWGVIGLAHDVDYE CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHH RYPDQHCHRAPEILKEAGWPEEYIRAVVSHGWGICSDVEPLSRLEKTLFTIDELTGLVAA CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH SALVRPSKSILDLPVKSVTKKWKDKAFAAGADRSVIEKGAAMLGVELPELIADTIDGMRA HHHHCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHH EAEAIGLKGNL HHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA