| Definition | Geobacter bemidjiensis Bem chromosome, complete genome. |
|---|---|
| Accession | NC_011146 |
| Length | 4,615,150 |
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The map label for this gene is 197116779
Identifier: 197116779
GI number: 197116779
Start: 457840
End: 458673
Strand: Direct
Name: 197116779
Synonym: Gbem_0381
Alternate gene names: NA
Gene position: 457840-458673 (Clockwise)
Preceding gene: 197116775
Following gene: 197116781
Centisome position: 9.92
GC content: 58.51
Gene sequence:
>834_bases ATGAAAAAATTAATGGTGATTGTAACGCTCCTTGTCACGTCACTTCTGTTCGGCTGTGGCGGAGGAGGAGGCGGCAGCGG CAGCAGCAGTAATAATAATAATAGCGATACCGCCAGTAACAGCGCCGACAGCGGAACCGGAGGTAGCACCGGCGGTACCG CAAACCCCGCCGGCGGAACCGGTGACAGCGCTGCAGGCGCGAATGGTGGAGGCGCGGGAGACACCGGCGCCACCCCAGTC CAGTCCCCGGCGGCGGCCATTCCGGGGGCACCGACCGAGGTCATGCTACAGCCGGGGAATGGTCAAGTCACTCTGTCCTG GAACCCCGTTGCCGATGCCACCTCGTATAACGTCTACTGGTCTACCGCCAGTGGCGCAGCGCTCAGCCAGGGCGCGCGAA AAACCGGCGTAGTCTCTCCTTGCTTGGTCACTGGATTGCAGAACGGTACGACTTATTACTTCGTTGTCACTGCGGCCAAT CAATATGGAGAATCCAGGGCCTCGGCTGAAATGAGCGCCGCTCCGGCGGTGTTTTTCGTTGCAGAGATGGTAAGCGGTAA AAGCTTCGACTACACCTTCTCCACAGGCGCAGCGGGAACCGTCAGTTTCAGCGCCGACGGAACCTTCACCGGTCAGAACT TGAGCGTAGGAATGCCTTTAACCGGGCAGTGGGTCATCAAGGATGGCGTGTTGACCTGCGTGTACCCCGGAGGAATAACG GAAACCCTGACGCTCATCTCGAGCACCTCCACCTCGTTCATTGTTACCTACTTCGTCACCTATGCCGACGGCAGTAGCAG CAACAGCGTGGAGGGTACTTTCGTGATGAAATAG
Upstream 100 bases:
>100_bases CGCGCGCCGCCTCCGCCTGGTGCTGAAGCTTTGGGGCGCCCGACTGGGACGCTTTCGACTGATGTGAAAGCATCACCGGG TTTAACTATGGAGGTACGAG
Downstream 100 bases:
>100_bases TAGTAACGAGCTTTGGCGGCAGTGTCATGAGGCGGTCCTGGACCGCCTTTTTTTTGAGGAGATTCCAAGCGAGGGCAAAA AAAGGCCTCCTTGCGGAGGC
Product: fibronectin type III domain lipoprotein
Products: NA
Alternate protein names: Fibronectin Type III Domain Protein; Fibronectin Type III; Von Willebrand Factor Type D Protein; Fibronectin Type III Domain Lipoprotein; Beta-1 3-Glucanase
Number of amino acids: Translated: 277; Mature: 277
Protein sequence:
>277_residues MKKLMVIVTLLVTSLLFGCGGGGGGSGSSSNNNNSDTASNSADSGTGGSTGGTANPAGGTGDSAAGANGGGAGDTGATPV QSPAAAIPGAPTEVMLQPGNGQVTLSWNPVADATSYNVYWSTASGAALSQGARKTGVVSPCLVTGLQNGTTYYFVVTAAN QYGESRASAEMSAAPAVFFVAEMVSGKSFDYTFSTGAAGTVSFSADGTFTGQNLSVGMPLTGQWVIKDGVLTCVYPGGIT ETLTLISSTSTSFIVTYFVTYADGSSSNSVEGTFVMK
Sequences:
>Translated_277_residues MKKLMVIVTLLVTSLLFGCGGGGGGSGSSSNNNNSDTASNSADSGTGGSTGGTANPAGGTGDSAAGANGGGAGDTGATPV QSPAAAIPGAPTEVMLQPGNGQVTLSWNPVADATSYNVYWSTASGAALSQGARKTGVVSPCLVTGLQNGTTYYFVVTAAN QYGESRASAEMSAAPAVFFVAEMVSGKSFDYTFSTGAAGTVSFSADGTFTGQNLSVGMPLTGQWVIKDGVLTCVYPGGIT ETLTLISSTSTSFIVTYFVTYADGSSSNSVEGTFVMK >Mature_277_residues MKKLMVIVTLLVTSLLFGCGGGGGGSGSSSNNNNSDTASNSADSGTGGSTGGTANPAGGTGDSAAGANGGGAGDTGATPV QSPAAAIPGAPTEVMLQPGNGQVTLSWNPVADATSYNVYWSTASGAALSQGARKTGVVSPCLVTGLQNGTTYYFVVTAAN QYGESRASAEMSAAPAVFFVAEMVSGKSFDYTFSTGAAGTVSFSADGTFTGQNLSVGMPLTGQWVIKDGVLTCVYPGGIT ETLTLISSTSTSFIVTYFVTYADGSSSNSVEGTFVMK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27370; Mature: 27370
Theoretical pI: Translated: 4.07; Mature: 4.07
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50853 FN3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLMVIVTLLVTSLLFGCGGGGGGSGSSSNNNNSDTASNSADSGTGGSTGGTANPAGGT CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GDSAAGANGGGAGDTGATPVQSPAAAIPGAPTEVMLQPGNGQVTLSWNPVADATSYNVYW CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEEEE STASGAALSQGARKTGVVSPCLVTGLQNGTTYYFVVTAANQYGESRASAEMSAAPAVFFV ECCCCCHHHCCCCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCHHHCCHHHCCCHHHHH AEMVSGKSFDYTFSTGAAGTVSFSADGTFTGQNLSVGMPLTGQWVIKDGVLTCVYPGGIT HHHHCCCCEEEEEECCCCEEEEECCCCEECCCCEEECCCCCCCEEEECCEEEEEECCCCH ETLTLISSTSTSFIVTYFVTYADGSSSNSVEGTFVMK HEEEEEECCCCEEEEEEEEEECCCCCCCCCCEEEEEC >Mature Secondary Structure MKKLMVIVTLLVTSLLFGCGGGGGGSGSSSNNNNSDTASNSADSGTGGSTGGTANPAGGT CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC GDSAAGANGGGAGDTGATPVQSPAAAIPGAPTEVMLQPGNGQVTLSWNPVADATSYNVYW CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEEEE STASGAALSQGARKTGVVSPCLVTGLQNGTTYYFVVTAANQYGESRASAEMSAAPAVFFV ECCCCCHHHCCCCCCCCCCHHHHHCCCCCCEEEEEEEECCCCCCHHHCCHHHCCCHHHHH AEMVSGKSFDYTFSTGAAGTVSFSADGTFTGQNLSVGMPLTGQWVIKDGVLTCVYPGGIT HHHHCCCCEEEEEECCCCEEEEECCCCEECCCCEEECCCCCCCEEEECCEEEEEECCCCH ETLTLISSTSTSFIVTYFVTYADGSSSNSVEGTFVMK HEEEEEECCCCEEEEEEEEEECCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA