BacMap

Definition	Phenylobacterium zucineum HLK1, complete genome.
Accession	NC_011144
Length	3,996,255

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The map label for this gene is yxnA [H]

Identifier: 197104318

GI number: 197104318

Start: 943841

End: 944941

Strand: Direct

Name: yxnA [H]

Synonym: PHZ_c0852

Alternate gene names: 197104318

Gene position: 943841-944941 (Clockwise)

Preceding gene: 197104311

Following gene: 197104319

Centisome position: 23.62

GC content: 74.3

Gene sequence:

>1101_bases
ATGCGCGCCAAGCTGAAGCCGCTCGACCAGCAGGTCATCGTCATCACCGGCGCGAGCTCGGGGATCGGCCTCGCGACCGC
TCGGGCCGCGGCCCAGGCCGGCGCCGCCGTGGTCCTGGCCGCCCGCAACGAAGAGGCCCTGCTGCAGATCTGCGCCGAAC
TCGAGGCGGACGGCGGCCGCGCCCACTTCGTGGTGGCGGACGTCGGGGAGGCCGAGGACGTCGCGCGGATCGCGCGCGAG
GCGGCGGCGCGGTTCGGCGGCTTCGACACCTGGGTGAACGACGCCGGCGTCGGCATCTACGGCGACAGCCTGGAGATCCC
CGTCGAGGACCACGAGCGCCTGTTCCGCACCAACTACTTCGGCGTGGTCAACGGCTCGGTCGAAGCCGCCCGCCACCTGA
AGGACCGCCCCGGCGGCGGGGCGATCATCAACGTCGGCTCGATCGTCTCGGACATGGCCTCGCCGCTGATGGGTCCGTAC
GTGGCCTCGAAGCATGCGGTGAAGGGCTTCACCGACTGCCTGCGGATGGACCTGCAACGCCAGGGCGCGCCGGTGCAGGT
GACGCTGATCAAGCCCGCCAGCATCGGCACGCCGTTCCCCGAGCACGCCCGCAACCTGATGGAGGAGCCCGCCCGCGTGC
CGCCGCCGGTCTATGCGCCCGAGGTGGTGGCCGGCGCGATCCTGCACGCGGCCCGGCGGCATGTGCGCGAGCTCACCGTC
GGCGGCGCCGGCCGGCAGCTCGTCCTGGCGCAGGCGATGGCGCCGTCCCTGACCGACAGGGTCTACGCCGCGGTCATGCC
GCCGCTGTCGCGCCGCAAGGGCGAGAAGGCGCAGGACGACAGCCTCTACTCGCCCTCGGCGGACGGCCAGGCCCGAACGG
ACGCCTACGGCAGCCGGCCGTTCTCGGTCTACACCGAGGCGCACAAGCGGCCGGGGCTGGTGCTGGGCGCGGCGATCCTG
GGGCTGGCGGCGGCGCTCGCCTGGCGCAACCGCGAGACCCTGCAGCGGCAGGCCGGTCCCCTGGTCCAGCGCGGCCGCGA
GCGCCTGCCCTGGACGCGGGCCACGGGCACGCCCGCCGGCCTGCAGACCACCCTGCACTAG

Upstream 100 bases:

>100_bases
TCTGCCGCGGCGGCGACAGGACGAGATCGGCGCCTAGCGGGGAACAGGCGCCGCGCGCTCCCTGTTGAGGACCTGAATCC
TCAGACATCCGGAGCCCCCC

Downstream 100 bases:

>100_bases
GCAAAATCTTCACCCCCTCTTAACGGCGAAGCGCCGACTCTCGGCGCCGTTGGCTGAGGGGCGTTCGTGCAGAGTCTTGT
CGCCGCCGTGGAGCGGCTCG

Product: short-chain dehydrogenase/reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MRAKLKPLDQQVIVITGASSGIGLATARAAAQAGAAVVLAARNEEALLQICAELEADGGRAHFVVADVGEAEDVARIARE
AAARFGGFDTWVNDAGVGIYGDSLEIPVEDHERLFRTNYFGVVNGSVEAARHLKDRPGGGAIINVGSIVSDMASPLMGPY
VASKHAVKGFTDCLRMDLQRQGAPVQVTLIKPASIGTPFPEHARNLMEEPARVPPPVYAPEVVAGAILHAARRHVRELTV
GGAGRQLVLAQAMAPSLTDRVYAAVMPPLSRRKGEKAQDDSLYSPSADGQARTDAYGSRPFSVYTEAHKRPGLVLGAAIL
GLAAALAWRNRETLQRQAGPLVQRGRERLPWTRATGTPAGLQTTLH

Sequences:

>Translated_366_residues
MRAKLKPLDQQVIVITGASSGIGLATARAAAQAGAAVVLAARNEEALLQICAELEADGGRAHFVVADVGEAEDVARIARE
AAARFGGFDTWVNDAGVGIYGDSLEIPVEDHERLFRTNYFGVVNGSVEAARHLKDRPGGGAIINVGSIVSDMASPLMGPY
VASKHAVKGFTDCLRMDLQRQGAPVQVTLIKPASIGTPFPEHARNLMEEPARVPPPVYAPEVVAGAILHAARRHVRELTV
GGAGRQLVLAQAMAPSLTDRVYAAVMPPLSRRKGEKAQDDSLYSPSADGQARTDAYGSRPFSVYTEAHKRPGLVLGAAIL
GLAAALAWRNRETLQRQAGPLVQRGRERLPWTRATGTPAGLQTTLH
>Mature_366_residues
MRAKLKPLDQQVIVITGASSGIGLATARAAAQAGAAVVLAARNEEALLQICAELEADGGRAHFVVADVGEAEDVARIARE
AAARFGGFDTWVNDAGVGIYGDSLEIPVEDHERLFRTNYFGVVNGSVEAARHLKDRPGGGAIINVGSIVSDMASPLMGPY
VASKHAVKGFTDCLRMDLQRQGAPVQVTLIKPASIGTPFPEHARNLMEEPARVPPPVYAPEVVAGAILHAARRHVRELTV
GGAGRQLVLAQAMAPSLTDRVYAAVMPPLSRRKGEKAQDDSLYSPSADGQARTDAYGSRPFSVYTEAHKRPGLVLGAAIL
GLAAALAWRNRETLQRQAGPLVQRGRERLPWTRATGTPAGLQTTLH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=202, Percent_Identity=33.6633663366337, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI4503817, Length=270, Percent_Identity=31.1111111111111, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI32483357, Length=194, Percent_Identity=31.4432989690722, Blast_Score=87, Evalue=4e-17,
Organism=Homo sapiens, GI157739938, Length=193, Percent_Identity=30.0518134715026, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI126723191, Length=173, Percent_Identity=31.2138728323699, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI40548397, Length=199, Percent_Identity=30.6532663316583, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI214010158, Length=199, Percent_Identity=30.6532663316583, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI214010156, Length=199, Percent_Identity=30.6532663316583, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI22758144, Length=199, Percent_Identity=30.6532663316583, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI33667109, Length=200, Percent_Identity=31, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI142976729, Length=228, Percent_Identity=26.7543859649123, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI109715829, Length=229, Percent_Identity=28.3842794759825, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI31542939, Length=233, Percent_Identity=25.7510729613734, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7706318, Length=178, Percent_Identity=30.8988764044944, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI5031737, Length=197, Percent_Identity=30.9644670050761, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI59889578, Length=187, Percent_Identity=32.0855614973262, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI224922801, Length=178, Percent_Identity=30.8988764044944, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI32455239, Length=220, Percent_Identity=28.1818181818182, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI5031765, Length=220, Percent_Identity=28.1818181818182, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI210032110, Length=223, Percent_Identity=26.457399103139, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4758504, Length=232, Percent_Identity=30.6034482758621, Blast_Score=69, Evalue=6e-12,
Organism=Escherichia coli, GI1786701, Length=231, Percent_Identity=29.4372294372294, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788459, Length=190, Percent_Identity=30, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI2367365, Length=189, Percent_Identity=31.7460317460317, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789208, Length=197, Percent_Identity=28.9340101522843, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082100, Length=218, Percent_Identity=30.2752293577982, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787526, Length=219, Percent_Identity=26.4840182648402, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI2367175, Length=216, Percent_Identity=32.4074074074074, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787905, Length=144, Percent_Identity=30.5555555555556, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787335, Length=196, Percent_Identity=31.6326530612245, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790717, Length=199, Percent_Identity=27.1356783919598, Blast_Score=61, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI71997402, Length=198, Percent_Identity=33.3333333333333, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=249, Percent_Identity=32.5301204819277, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=250, Percent_Identity=30.4, Blast_Score=88, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=247, Percent_Identity=29.9595141700405, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17570069, Length=265, Percent_Identity=27.1698113207547, Blast_Score=86, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17560332, Length=252, Percent_Identity=29.3650793650794, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17567345, Length=194, Percent_Identity=27.319587628866, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17560676, Length=197, Percent_Identity=28.4263959390863, Blast_Score=75, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI115534660, Length=195, Percent_Identity=28.7179487179487, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=247, Percent_Identity=27.9352226720648, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193203115, Length=228, Percent_Identity=27.6315789473684, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193203117, Length=231, Percent_Identity=27.7056277056277, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=253, Percent_Identity=28.8537549407115, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=254, Percent_Identity=29.5275590551181, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=254, Percent_Identity=28.3464566929134, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=257, Percent_Identity=28.0155642023346, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=258, Percent_Identity=28.2945736434109, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=206, Percent_Identity=25.7281553398058, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=206, Percent_Identity=25.7281553398058, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=199, Percent_Identity=29.6482412060301, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=178, Percent_Identity=29.2134831460674, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=232, Percent_Identity=26.7241379310345, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=261, Percent_Identity=28.735632183908, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI193204405, Length=199, Percent_Identity=31.6582914572864, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=198, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=201, Percent_Identity=29.8507462686567, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=192, Percent_Identity=30.2083333333333, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17531453, Length=251, Percent_Identity=28.2868525896414, Blast_Score=65, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=224, Percent_Identity=31.25, Blast_Score=64, Evalue=1e-10,
Organism=Saccharomyces cerevisiae, GI6323882, Length=240, Percent_Identity=31.6666666666667, Blast_Score=91, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21356301, Length=269, Percent_Identity=30.8550185873606, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24644339, Length=199, Percent_Identity=33.1658291457286, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI116007236, Length=246, Percent_Identity=30.4878048780488, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI28571526, Length=206, Percent_Identity=32.5242718446602, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI28571387, Length=228, Percent_Identity=30.2631578947368, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI116007238, Length=186, Percent_Identity=31.1827956989247, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI23397609, Length=209, Percent_Identity=32.5358851674641, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24641388, Length=252, Percent_Identity=31.7460317460317, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21358495, Length=197, Percent_Identity=28.9340101522843, Blast_Score=78, Evalue=9e-15,
Organism=Drosophila melanogaster, GI21357041, Length=212, Percent_Identity=30.188679245283, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI281364494, Length=253, Percent_Identity=28.4584980237154, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641232, Length=209, Percent_Identity=27.2727272727273, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24580925, Length=207, Percent_Identity=30.4347826086957, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007234, Length=246, Percent_Identity=28.4552845528455, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21355319, Length=198, Percent_Identity=29.7979797979798, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24663911, Length=234, Percent_Identity=28.2051282051282, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24639444, Length=191, Percent_Identity=31.413612565445, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI17737361, Length=222, Percent_Identity=28.3783783783784, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648693, Length=247, Percent_Identity=27.9352226720648, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI21355889, Length=247, Percent_Identity=27.9352226720648, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24640492, Length=240, Percent_Identity=25.8333333333333, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24651139, Length=194, Percent_Identity=29.8969072164948, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648944, Length=194, Percent_Identity=27.319587628866, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007232, Length=193, Percent_Identity=30.5699481865285, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24581726, Length=260, Percent_Identity=26.1538461538462, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38801; Mature: 38801

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAKLKPLDQQVIVITGASSGIGLATARAAAQAGAAVVLAARNEEALLQICAELEADGGR
CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCE
AHFVVADVGEAEDVARIAREAAARFGGFDTWVNDAGVGIYGDSLEIPVEDHERLFRTNYF
EEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHCCCCCEEECCCEECCHHHHHHHHHHCCE
GVVNGSVEAARHLKDRPGGGAIINVGSIVSDMASPLMGPYVASKHAVKGFTDCLRMDLQR
EEECCCHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
QGAPVQVTLIKPASIGTPFPEHARNLMEEPARVPPPVYAPEVVAGAILHAARRHVRELTV
CCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GGAGRQLVLAQAMAPSLTDRVYAAVMPPLSRRKGEKAQDDSLYSPSADGQARTDAYGSRP
CCCCCHHHHHHHHCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FSVYTEAHKRPGLVLGAAILGLAAALAWRNRETLQRQAGPLVQRGRERLPWTRATGTPAG
CHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
LQTTLH
CCCCCC
>Mature Secondary Structure
MRAKLKPLDQQVIVITGASSGIGLATARAAAQAGAAVVLAARNEEALLQICAELEADGGR
CCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCE
AHFVVADVGEAEDVARIAREAAARFGGFDTWVNDAGVGIYGDSLEIPVEDHERLFRTNYF
EEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHCCCCCEEECCCEECCHHHHHHHHHHCCE
GVVNGSVEAARHLKDRPGGGAIINVGSIVSDMASPLMGPYVASKHAVKGFTDCLRMDLQR
EEECCCHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
QGAPVQVTLIKPASIGTPFPEHARNLMEEPARVPPPVYAPEVVAGAILHAARRHVRELTV
CCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
GGAGRQLVLAQAMAPSLTDRVYAAVMPPLSRRKGEKAQDDSLYSPSADGQARTDAYGSRP
CCCCCHHHHHHHHCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FSVYTEAHKRPGLVLGAAILGLAAALAWRNRETLQRQAGPLVQRGRERLPWTRATGTPAG
CHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC
LQTTLH
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]