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The map label for this gene is ccsA [H]

Identifier: 194334643

GI number: 194334643

Start: 2017882

End: 2018682

Strand: Reverse

Name: ccsA [H]

Synonym: Paes_1844

Alternate gene names: 194334643

Gene position: 2018682-2017882 (Counterclockwise)

Preceding gene: 194334644

Following gene: 194334642

Centisome position: 80.33

GC content: 53.06

Gene sequence:

>801_bases
ATGACGTGGGTCGAGTTTCCTTATGCCGCATATACCGCCATAGCCTTCTGGGCATGCGGCGGGGCAGTTTCTCTTGCCGG
GGTCAGAAAGCCAGGGCTGAAGGTTCCCGGACTGCTCCTGATGCTTGCCGGTTCAGCGGTCATGGTGCTGTTTCTTATTC
TGTTCTGGGTCGGTCTGGACCGTCCCCCACTTCGAACGCTGGGAGAGACCCGTCTCTGGTATGCGATACTGATTCCTCTT
GTGGGTTTTCTGGTGGAATATCGCTGGAAAATAACATGGCTGAAATACTACTGTGTGGTGTTAGCAGCACTGTTTCTCAG
TATCAATCTCATGTCTCCCGACCTCTACGATAAAAGTCTTATGCCTGCGCTGCAGAGTGTCTGGTTTATACCTCATGTGG
TGGTCTATCTTGTCGGTTATGTGCTGCTTGCCGCCTCATCTGCAGCGGCATGGCATACGCTGTTGCGTTCTCCACGAGGC
GGTATGGGGGAAACAGGCGAGAGTGTTTCGCACTATCTTGCGCTGCTTGGCTTTGTTTTTCTTTCCTTCGGGCTGGTTTT
TGGTGCGCTCTGGGCCAAAGAGGCATGGGGGCATTACTGGACCTGGGATCCTAAAGAGACATGGGCACTCATCTCATGGC
TGGTCTATCTGGGCTATATGCACGCCAATGCCATGAACATCGGTCGTCGTTCTCTTCAATGGTATCTCGGGCTGGCTTTT
CTTGTGCTGCTGGTCAGCTGGTTCGGGGTCAACTACCTTCCATCAGCGCAGAACAGCGTGCACAGTTATCAGTCTGTGTA
A

Upstream 100 bases:

>100_bases
TTCGCGATCCCTGGCTTCCGGCAGTTTACACAGGCTTTTTTATGATTCTGATCGGCAATGTTCTCTTTTTCTGGAAAGGT
ATGAAAAAAACCAGGGTATT

Downstream 100 bases:

>100_bases
GTTCTGTTATGGTATCCATGAATGTTCAACCCCGGTCACGGGGAAAGTGTTGATTATGCGACTACGCCGGATTTTTTCAT
TGATCATACTGCTGAACCTT

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MTWVEFPYAAYTAIAFWACGGAVSLAGVRKPGLKVPGLLLMLAGSAVMVLFLILFWVGLDRPPLRTLGETRLWYAILIPL
VGFLVEYRWKITWLKYYCVVLAALFLSINLMSPDLYDKSLMPALQSVWFIPHVVVYLVGYVLLAASSAAAWHTLLRSPRG
GMGETGESVSHYLALLGFVFLSFGLVFGALWAKEAWGHYWTWDPKETWALISWLVYLGYMHANAMNIGRRSLQWYLGLAF
LVLLVSWFGVNYLPSAQNSVHSYQSV

Sequences:

>Translated_266_residues
MTWVEFPYAAYTAIAFWACGGAVSLAGVRKPGLKVPGLLLMLAGSAVMVLFLILFWVGLDRPPLRTLGETRLWYAILIPL
VGFLVEYRWKITWLKYYCVVLAALFLSINLMSPDLYDKSLMPALQSVWFIPHVVVYLVGYVLLAASSAAAWHTLLRSPRG
GMGETGESVSHYLALLGFVFLSFGLVFGALWAKEAWGHYWTWDPKETWALISWLVYLGYMHANAMNIGRRSLQWYLGLAF
LVLLVSWFGVNYLPSAQNSVHSYQSV
>Mature_265_residues
TWVEFPYAAYTAIAFWACGGAVSLAGVRKPGLKVPGLLLMLAGSAVMVLFLILFWVGLDRPPLRTLGETRLWYAILIPLV
GFLVEYRWKITWLKYYCVVLAALFLSINLMSPDLYDKSLMPALQSVWFIPHVVVYLVGYVLLAASSAAAWHTLLRSPRGG
MGETGESVSHYLALLGFVFLSFGLVFGALWAKEAWGHYWTWDPKETWALISWLVYLGYMHANAMNIGRRSLQWYLGLAFL
VLLVSWFGVNYLPSAQNSVHSYQSV

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 29943; Mature: 29812

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
TWVEFPYAAYTAIAFWACGGAVSLAGVRKPGLKVPGLLLMLAGSAVMVLFLILFWVGLD
CCCCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
RPPLRTLGETRLWYAILIPLVGFLVEYRWKITWLKYYCVVLAALFLSINLMSPDLYDKSL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
MPALQSVWFIPHVVVYLVGYVLLAASSAAAWHTLLRSPRGGMGETGESVSHYLALLGFVF
HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
LSFGLVFGALWAKEAWGHYWTWDPKETWALISWLVYLGYMHANAMNIGRRSLQWYLGLAF
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLLVSWFGVNYLPSAQNSVHSYQSV
HHHHHHHHCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA