Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
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Accession | NC_011004 |
Length | 5,744,041 |
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The map label for this gene is 192289135
Identifier: 192289135
GI number: 192289135
Start: 739047
End: 741449
Strand: Reverse
Name: 192289135
Synonym: Rpal_0705
Alternate gene names: NA
Gene position: 741449-739047 (Counterclockwise)
Preceding gene: 192289147
Following gene: 192289134
Centisome position: 12.91
GC content: 64.79
Gene sequence:
>2403_bases ATGTCTTTTGTTTCTATCGATCACACACCACGCGCTCAGAATCGTATCGCCTGGTCGTTTGATGTTTTCGATACATTTCT GATCCGCGCCTGCACCACGCCGACCGGCGTATTCGAGCTGACTTATCAGCTGTCGCGTGTTTCGGATCTGTGTCCGAACA TGTCTGAGCATTTCGTCCAGCATCGTATCTTGGCCGAGTCGCGTGTGCGCGAGGCGGCGCGTTCGCGCGGAGAGGCGACA GAGATCAACATCGACCAGATCTACGCGCGCTTCCCCTTCCGGCTGTTCGGATTGGAGCGCGAGGATCTCAACCACCTGAT CGAGGCCGAGTTCAGCGCCGAACTCGAACTGTGCCGAATCAATCCGGACATGCTCGAGCAATATCGCGCGCGGCGCCGCG CCGGGAATCGCGTCGGCTTCATCTCCGACACCTATTGGAATACCGAGCGGCTGGGACGGCTGCTGCGCGCCTGCAGTCCG GGGCTGACGTGGGATTTCCTCTACGCATCGTGCGATCACGGCAGCAGTAAAGGTGAGGATCTGTTCGCGACCTATCTGCG CCAACAGGGCGTCGACGCGAGCTCGGCATACCATGTCGGCGACAATGAGCATGCCGACATTCGCGGCGCGAAGCGCCATG GCATCCGGCCACGGCACTATCCGCAGGCCGGGCCGCGGCTCACAACGCGGCTGCTGCGCGAAGATTTGCTGCAGCAGCTG ATGTTCAAAGGACAGCCGACGAGGCTCGACCGCGGCGCGCGTACACTGCGGCGGATGGTGGCGGCGCGTAGTGCCGAACA ATCTGCGGCGCATCATCTCGGCAGCACGGTGGTCGGACCGGTGTTGGCAGCATTCGACCAATTCGTGGCGACGCGCAGGG CCGACCTTGCAGGTGATGGCCGCCGTGTCGCGATCGGGTTTTTGGGCCGCGACGGCTTCCTGTCGCACCGCCTGTGGCAA CAGAGCCGCGGCGAACCGGCCGCTTATCTGGAGATCAATCGCCGGGTCAGCCTGATTGCCTCGGCCGATACGATCGGGCC AATCTGCGAATTGATCCGCAAGATCCCAAGGATCGACGCGGCGAAACTGCAGGACATGCTCAAAATCTTGCCGCCGGCCC TGGCGGATTTTTTTGCGCACTGCGACGGTGGAATCGCCACCGGCGCCGAACTGGCTGATGCCCTTCCAAACCTGATCGAG TCGCACGAGATCGCAATGCTCGCGGCCAGTCTGCGCGGACGCCTGCTCGATTACATCCGGCAGCAGATTCCCGACCTCGA CGACTGCACCGACCTGCTGCTGGTCGATCTCGGCTATTCGGCCAGCGTGCAGAAGGCGCTGAGCCGCGTGTTCAAACTCG CCGGTCTCGGGCTGCGCGTCCACGGCTGCTATTTGCTCGCCCTCGGCGACGCGTGGGACGAGCTCGCCGAGGAAGACACC GTCTCGGGGCTGATCGACGATCTGGTGCTGGCGCCGCATCTCAATCGAACGCTGATCCGTAACGCGCCGATCTTCGAGCA GATCTGCTGCTCGGCAGACGGCTCGGTACGCGACTATGAGGACGGTCACGTGCTCCGCGAGCCCGATCCGCGACCGGCCA CGCAGATCGAGGTGACATCCGAGATTCAGGCGGGAGTGTTGACCTACGCGTCGGCGGCACGCGGCGTCGCCGACGAGGTT GGGCTCGATCCCTATCGGGACCTCGGCGTCGCCGCGCGCGCGACCGCCACGACGCTCGGCCGCCTGTTGCTGCTGCCGGA CGACGAAGAACTGGCGCTGTTCGGCTCATTTCAGCACGACGTCAATCTCGGCACCGATACGCTCGCGCCCATGATTCACA GCAACGCGATCAGCAACCAGATCGCGCTGCGGGGGCTGCCGGTGACCTGTGCGCTGTCGCCGCCGCCGATGTGGATGGCG GGCAGCTTCGCTGCGGTCTCGCCGTCGCATGCCTATCTGTATGCGTTGTTCGGTGCTGGCCAACTTCCCGGCGAGATGGT CGGCGACCGGCCTCACGGCTCGCTCCGAATCGGTCTGTTCGGTGCGGACGGCGCGGGATCGCTTCAGGAGGTGTCGGTGC TGCGTACTGGTTTCGGCGGCTTGCGCCTGCGCATTCCGCTGTCTGGCGCGATGCAGATCGCCATGATCGCGGTGCCGCTG GGCCGACTCGCGCGCGAGGGCCTGATCGACGGGGTGATGATCCAGCGCGGAAGCACGGCCGCCGAGACGATGCGCACCGA AGCGTTCATGCCGGTCGCCGCCGACCGCCTCAGCACGGCCGGGCTGACCCGCAGCGGACGGCACTACCTCGCTGCAGACG ACGAGGGCTGCCTGCTGATTCCGGTCGAGCCGGCGGACGGCATCACCATCTACACCGTCGCAGTGACCCCGCTCGGCTGT TAG
Upstream 100 bases:
>100_bases GTGAAAGCAATCAACTGATCGCACGACGACTTTCTGTATCGACGCGCCTGATTTGTACCATGCGTCCGTTGAACAAAGGC AAACAATTGAGTTTCGCCTT
Downstream 100 bases:
>100_bases CGGATCAGGCGCCGGCCGCGCCTGATCCGGCGGCCTGCTGCGTTGAAGTCATAACCATGCCTTCAACGAGCGCGCCATGA TGCCGACCTCCCCCTCCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Haloacid Dehalogenase Domain-Containing Protein Hydrolase; Xsa-Associated Protein; HAD Family Hydrolase; Hydrolase; HAD Superfamily Hydrolase-Like Protein
Number of amino acids: Translated: 800; Mature: 799
Protein sequence:
>800_residues MSFVSIDHTPRAQNRIAWSFDVFDTFLIRACTTPTGVFELTYQLSRVSDLCPNMSEHFVQHRILAESRVREAARSRGEAT EINIDQIYARFPFRLFGLEREDLNHLIEAEFSAELELCRINPDMLEQYRARRRAGNRVGFISDTYWNTERLGRLLRACSP GLTWDFLYASCDHGSSKGEDLFATYLRQQGVDASSAYHVGDNEHADIRGAKRHGIRPRHYPQAGPRLTTRLLREDLLQQL MFKGQPTRLDRGARTLRRMVAARSAEQSAAHHLGSTVVGPVLAAFDQFVATRRADLAGDGRRVAIGFLGRDGFLSHRLWQ QSRGEPAAYLEINRRVSLIASADTIGPICELIRKIPRIDAAKLQDMLKILPPALADFFAHCDGGIATGAELADALPNLIE SHEIAMLAASLRGRLLDYIRQQIPDLDDCTDLLLVDLGYSASVQKALSRVFKLAGLGLRVHGCYLLALGDAWDELAEEDT VSGLIDDLVLAPHLNRTLIRNAPIFEQICCSADGSVRDYEDGHVLREPDPRPATQIEVTSEIQAGVLTYASAARGVADEV GLDPYRDLGVAARATATTLGRLLLLPDDEELALFGSFQHDVNLGTDTLAPMIHSNAISNQIALRGLPVTCALSPPPMWMA GSFAAVSPSHAYLYALFGAGQLPGEMVGDRPHGSLRIGLFGADGAGSLQEVSVLRTGFGGLRLRIPLSGAMQIAMIAVPL GRLAREGLIDGVMIQRGSTAAETMRTEAFMPVAADRLSTAGLTRSGRHYLAADDEGCLLIPVEPADGITIYTVAVTPLGC
Sequences:
>Translated_800_residues MSFVSIDHTPRAQNRIAWSFDVFDTFLIRACTTPTGVFELTYQLSRVSDLCPNMSEHFVQHRILAESRVREAARSRGEAT EINIDQIYARFPFRLFGLEREDLNHLIEAEFSAELELCRINPDMLEQYRARRRAGNRVGFISDTYWNTERLGRLLRACSP GLTWDFLYASCDHGSSKGEDLFATYLRQQGVDASSAYHVGDNEHADIRGAKRHGIRPRHYPQAGPRLTTRLLREDLLQQL MFKGQPTRLDRGARTLRRMVAARSAEQSAAHHLGSTVVGPVLAAFDQFVATRRADLAGDGRRVAIGFLGRDGFLSHRLWQ QSRGEPAAYLEINRRVSLIASADTIGPICELIRKIPRIDAAKLQDMLKILPPALADFFAHCDGGIATGAELADALPNLIE SHEIAMLAASLRGRLLDYIRQQIPDLDDCTDLLLVDLGYSASVQKALSRVFKLAGLGLRVHGCYLLALGDAWDELAEEDT VSGLIDDLVLAPHLNRTLIRNAPIFEQICCSADGSVRDYEDGHVLREPDPRPATQIEVTSEIQAGVLTYASAARGVADEV GLDPYRDLGVAARATATTLGRLLLLPDDEELALFGSFQHDVNLGTDTLAPMIHSNAISNQIALRGLPVTCALSPPPMWMA GSFAAVSPSHAYLYALFGAGQLPGEMVGDRPHGSLRIGLFGADGAGSLQEVSVLRTGFGGLRLRIPLSGAMQIAMIAVPL GRLAREGLIDGVMIQRGSTAAETMRTEAFMPVAADRLSTAGLTRSGRHYLAADDEGCLLIPVEPADGITIYTVAVTPLGC >Mature_799_residues SFVSIDHTPRAQNRIAWSFDVFDTFLIRACTTPTGVFELTYQLSRVSDLCPNMSEHFVQHRILAESRVREAARSRGEATE INIDQIYARFPFRLFGLEREDLNHLIEAEFSAELELCRINPDMLEQYRARRRAGNRVGFISDTYWNTERLGRLLRACSPG LTWDFLYASCDHGSSKGEDLFATYLRQQGVDASSAYHVGDNEHADIRGAKRHGIRPRHYPQAGPRLTTRLLREDLLQQLM FKGQPTRLDRGARTLRRMVAARSAEQSAAHHLGSTVVGPVLAAFDQFVATRRADLAGDGRRVAIGFLGRDGFLSHRLWQQ SRGEPAAYLEINRRVSLIASADTIGPICELIRKIPRIDAAKLQDMLKILPPALADFFAHCDGGIATGAELADALPNLIES HEIAMLAASLRGRLLDYIRQQIPDLDDCTDLLLVDLGYSASVQKALSRVFKLAGLGLRVHGCYLLALGDAWDELAEEDTV SGLIDDLVLAPHLNRTLIRNAPIFEQICCSADGSVRDYEDGHVLREPDPRPATQIEVTSEIQAGVLTYASAARGVADEVG LDPYRDLGVAARATATTLGRLLLLPDDEELALFGSFQHDVNLGTDTLAPMIHSNAISNQIALRGLPVTCALSPPPMWMAG SFAAVSPSHAYLYALFGAGQLPGEMVGDRPHGSLRIGLFGADGAGSLQEVSVLRTGFGGLRLRIPLSGAMQIAMIAVPLG RLAREGLIDGVMIQRGSTAAETMRTEAFMPVAADRLSTAGLTRSGRHYLAADDEGCLLIPVEPADGITIYTVAVTPLGC
Specific function: Unknown
COG id: COG5610
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87389; Mature: 87258
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: PS00047 HISTONE_H4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFVSIDHTPRAQNRIAWSFDVFDTFLIRACTTPTGVFELTYQLSRVSDLCPNMSEHFVQ CCEEECCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH HRILAESRVREAARSRGEATEINIDQIYARFPFRLFGLEREDLNHLIEAEFSAELELCRI HHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCHHEECCCHHHHHHHHHHHHCCCEEEEEC NPDMLEQYRARRRAGNRVGFISDTYWNTERLGRLLRACSPGLTWDFLYASCDHGSSKGED CHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHH LFATYLRQQGVDASSAYHVGDNEHADIRGAKRHGIRPRHYPQAGPRLTTRLLREDLLQQL HHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH MFKGQPTRLDRGARTLRRMVAARSAEQSAAHHLGSTVVGPVLAAFDQFVATRRADLAGDG HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC RRVAIGFLGRDGFLSHRLWQQSRGEPAAYLEINRRVSLIASADTIGPICELIRKIPRIDA CEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCEEEEEECCCCHHHHHHHHHHCCCCCH AKLQDMLKILPPALADFFAHCDGGIATGAELADALPNLIESHEIAMLAASLRGRLLDYIR HHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQIPDLDDCTDLLLVDLGYSASVQKALSRVFKLAGLGLRVHGCYLLALGDAWDELAEEDT HHCCCCCHHHHHHHEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCHHHHHHHHHH VSGLIDDLVLAPHLNRTLIRNAPIFEQICCSADGSVRDYEDGHVLREPDPRPATQIEVTS HHHHHHHHHHCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCEEEEHH EIQAGVLTYASAARGVADEVGLDPYRDLGVAARATATTLGRLLLLPDDEELALFGSFQHD HHHHHHHHHHHHHCCCHHHCCCCCCHHCCHHHHHHHHHHCEEEECCCCCCEEEEECCCCC VNLGTDTLAPMIHSNAISNQIALRGLPVTCALSPPPMWMAGSFAAVSPSHAYLYALFGAG CCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCCCEECCCCCEEEEEEECCC QLPGEMVGDRPHGSLRIGLFGADGAGSLQEVSVLRTGFGGLRLRIPLSGAMQIAMIAVPL CCCHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH GRLAREGLIDGVMIQRGSTAAETMRTEAFMPVAADRLSTAGLTRSGRHYLAADDEGCLLI HHHHHHHHHCCCEEECCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEECCCCEEEE PVEPADGITIYTVAVTPLGC EECCCCCEEEEEEEECCCCC >Mature Secondary Structure SFVSIDHTPRAQNRIAWSFDVFDTFLIRACTTPTGVFELTYQLSRVSDLCPNMSEHFVQ CEEECCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH HRILAESRVREAARSRGEATEINIDQIYARFPFRLFGLEREDLNHLIEAEFSAELELCRI HHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCHHEECCCHHHHHHHHHHHHCCCEEEEEC NPDMLEQYRARRRAGNRVGFISDTYWNTERLGRLLRACSPGLTWDFLYASCDHGSSKGED CHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCHH LFATYLRQQGVDASSAYHVGDNEHADIRGAKRHGIRPRHYPQAGPRLTTRLLREDLLQQL HHHHHHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH MFKGQPTRLDRGARTLRRMVAARSAEQSAAHHLGSTVVGPVLAAFDQFVATRRADLAGDG HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC RRVAIGFLGRDGFLSHRLWQQSRGEPAAYLEINRRVSLIASADTIGPICELIRKIPRIDA CEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCEEEEEECCCCHHHHHHHHHHCCCCCH AKLQDMLKILPPALADFFAHCDGGIATGAELADALPNLIESHEIAMLAASLRGRLLDYIR HHHHHHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QQIPDLDDCTDLLLVDLGYSASVQKALSRVFKLAGLGLRVHGCYLLALGDAWDELAEEDT HHCCCCCHHHHHHHEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCHHHHHHHHHH VSGLIDDLVLAPHLNRTLIRNAPIFEQICCSADGSVRDYEDGHVLREPDPRPATQIEVTS HHHHHHHHHHCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCCCCEECCCCCCCCCEEEEHH EIQAGVLTYASAARGVADEVGLDPYRDLGVAARATATTLGRLLLLPDDEELALFGSFQHD HHHHHHHHHHHHHCCCHHHCCCCCCHHCCHHHHHHHHHHCEEEECCCCCCEEEEECCCCC VNLGTDTLAPMIHSNAISNQIALRGLPVTCALSPPPMWMAGSFAAVSPSHAYLYALFGAG CCCCHHHHHHHHHHHHHCCCEEEECCCEEEECCCCCCCCCCCCEECCCCCEEEEEEECCC QLPGEMVGDRPHGSLRIGLFGADGAGSLQEVSVLRTGFGGLRLRIPLSGAMQIAMIAVPL CCCHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH GRLAREGLIDGVMIQRGSTAAETMRTEAFMPVAADRLSTAGLTRSGRHYLAADDEGCLLI HHHHHHHHHCCCEEECCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEECCCCEEEE PVEPADGITIYTVAVTPLGC EECCCCCEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA