Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
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Accession | NC_011004 |
Length | 5,744,041 |
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The map label for this gene is 192289061
Identifier: 192289061
GI number: 192289061
Start: 684734
End: 685435
Strand: Reverse
Name: 192289061
Synonym: Rpal_0631
Alternate gene names: NA
Gene position: 685435-684734 (Counterclockwise)
Preceding gene: 192289062
Following gene: 192289060
Centisome position: 11.93
GC content: 64.67
Gene sequence:
>702_bases ATGATGCAGCTCGGCAAGCGCGGCTTCGATCACATCGAGACCTGGGTTTTCGACCTCGACAACACGCTGTACCCGCATCA TCTCAATCTGTGGCAGCAGGTCGATGCGCGGATTCGCGACTTCGTCTCCGATTGGCTGAAAGTGCCGCCGGAAGAAGCCT TCCGCATCCAGAAGGACTACTACAAGCGCTACGGCACCACGATGCGCGGGATGATGACCGAGCACGGCGTCCACGCCGAC GACTACCTGGCTTACGTCCACGCGATCGACCATTCGCCGCTGCTGCCGAATCCGGCGATGGGCGATGCCATCGAGCGACT GCCGGGCCGCAAGCTGATCCTGACCAACGGCTCGACCGCGCACGCCGGCAAGGTGCTGGAGCGGCTCGGCATCGGTCATC ATTTTGAAGCGGTGTTCGACATCATCGCCGCTGAGCTCGAGCCGAAGCCGGCGCCGCAGACCTACCGCCGCTTTCTCGAC CGCCACGGCGTCGACCCGGCCCGCGCCGCGATGTTCGAAGACCTCGCCCGCAATCTCACCGTGCCGCACCAGCTCGGCAT GACCACGGTGCTGGTGGTGCCTGACGGTAGCCAGGACGTGGTGCGCGAAGACTGGGAGCTCGAAGGCCGCGACGCCGCCC ACGTCGATCACGTGACCGATGATCTGACGGGGTTCTTGGGGAAGCTGAGCCCCGCGAAGTAG
Upstream 100 bases:
>100_bases AGCTCGGCGAGCAGGGAGATTGCGCGGCCCGCGGCCTCGCCGCCACCGGCTTCGCCGCCATTGATCTAAGTAGCGGCAAG ACATTGAGGTTGTCCGCACC
Downstream 100 bases:
>100_bases GGCGCCGCGCCTCCCCAGAGAAAGACGTCATCGCCCGCGCAGACGGGCAACCCAGTATTCCAGAGCGTCTGCGATTGCCG TCCCCCACTTCAGCGCCCCT
Product: pyrimidine 5'-nucleotidase
Products: NA
Alternate protein names: Hydrolase; HAD-Superfamily Hydrolase; HAD Family Pyrimidine 5-Nucleotidase; HAD Superfamily Hydrolase; Hydrolase Haloacid Dehalogenase-Like Family; HAD Family Hydrolase; Phosphatase; Hydrolase Protein; HAD Superfamily Protein; Haloacid Dehalogenase Superfamily Hydrolase; Haloacid Dehalogenase; Phosphoglycolate Phosphatase; Hydrolase Ripening-Related Protein-Like; Haloacid Dehalogenase-Like Hydrolase Family Protein; Hydrolase Of HAD Superfamily
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MMQLGKRGFDHIETWVFDLDNTLYPHHLNLWQQVDARIRDFVSDWLKVPPEEAFRIQKDYYKRYGTTMRGMMTEHGVHAD DYLAYVHAIDHSPLLPNPAMGDAIERLPGRKLILTNGSTAHAGKVLERLGIGHHFEAVFDIIAAELEPKPAPQTYRRFLD RHGVDPARAAMFEDLARNLTVPHQLGMTTVLVVPDGSQDVVREDWELEGRDAAHVDHVTDDLTGFLGKLSPAK
Sequences:
>Translated_233_residues MMQLGKRGFDHIETWVFDLDNTLYPHHLNLWQQVDARIRDFVSDWLKVPPEEAFRIQKDYYKRYGTTMRGMMTEHGVHAD DYLAYVHAIDHSPLLPNPAMGDAIERLPGRKLILTNGSTAHAGKVLERLGIGHHFEAVFDIIAAELEPKPAPQTYRRFLD RHGVDPARAAMFEDLARNLTVPHQLGMTTVLVVPDGSQDVVREDWELEGRDAAHVDHVTDDLTGFLGKLSPAK >Mature_233_residues MMQLGKRGFDHIETWVFDLDNTLYPHHLNLWQQVDARIRDFVSDWLKVPPEEAFRIQKDYYKRYGTTMRGMMTEHGVHAD DYLAYVHAIDHSPLLPNPAMGDAIERLPGRKLILTNGSTAHAGKVLERLGIGHHFEAVFDIIAAELEPKPAPQTYRRFLD RHGVDPARAAMFEDLARNLTVPHQLGMTTVLVVPDGSQDVVREDWELEGRDAAHVDHVTDDLTGFLGKLSPAK
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6321214, Length=229, Percent_Identity=27.0742358078603, Blast_Score=67, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26450; Mature: 26450
Theoretical pI: Translated: 6.14; Mature: 6.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMQLGKRGFDHIETWVFDLDNTLYPHHLNLWQQVDARIRDFVSDWLKVPPEEAFRIQKDY CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH YKRYGTTMRGMMTEHGVHADDYLAYVHAIDHSPLLPNPAMGDAIERLPGRKLILTNGSTA HHHHCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCEEEEECCCCH HAGKVLERLGIGHHFEAVFDIIAAELEPKPAPQTYRRFLDRHGVDPARAAMFEDLARNLT HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC VPHQLGMTTVLVVPDGSQDVVREDWELEGRDAAHVDHVTDDLTGFLGKLSPAK CCHHCCCEEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MMQLGKRGFDHIETWVFDLDNTLYPHHLNLWQQVDARIRDFVSDWLKVPPEEAFRIQKDY CCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH YKRYGTTMRGMMTEHGVHADDYLAYVHAIDHSPLLPNPAMGDAIERLPGRKLILTNGSTA HHHHCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCEEEEECCCCH HAGKVLERLGIGHHFEAVFDIIAAELEPKPAPQTYRRFLDRHGVDPARAAMFEDLARNLT HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCC VPHQLGMTTVLVVPDGSQDVVREDWELEGRDAAHVDHVTDDLTGFLGKLSPAK CCHHCCCEEEEEECCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA