Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
---|---|
Accession | NC_011004 |
Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is 192289062
Identifier: 192289062
GI number: 192289062
Start: 685432
End: 686451
Strand: Reverse
Name: 192289062
Synonym: Rpal_0632
Alternate gene names: NA
Gene position: 686451-685432 (Counterclockwise)
Preceding gene: 192289063
Following gene: 192289061
Centisome position: 11.95
GC content: 67.65
Gene sequence:
>1020_bases ATGCCCGGCACAAGGCCGGGCATGACGGGCTGGAGATCACGCGCCCTCGCCACCATTGTCACCACTCTCTCCCTCACCTC CGCGGCTCACGCCGACCTCAAGCTGTGCAACCGCATGAGCTACGTGGTCGAGACGGCAATCGGGGTGGATTCCAACGGCA CCACCGCGTCGCGCGGATGGCTGCGGATCGATCCGGCGCAATGCCGGGTCGTGGTGCAAGGCGCGCTCAACGCCGACCGC ATCATGCTGAATGCACGCGCGCTGCCGGTGTACGGCGTCTCACCGCTGCCGCAGAACGGCACTGACCGGCTGTGCATCGC CGAGGACAATTTCGTCATCGCCGCCGCGCGGCAATGCCGCGGCGGCCAGACGCTCGCCGCCTTCACCGAGATCAAGCCGA CCGACACCGAGGACGGCAACAAGATCGCGTATCTGGCCGAGGACTCCGGCTACGACGACGAGCAGGCCAAGCTCGCCGCG ATCCAGCGGCTGTTGGTGATCGCCGGCTACGACGCCTCGCCGATCGACGGCGTCGACGGACCGAAGACGCAGGCGGCGCT GTCCGCCTTTCTCAAGAGCCGCGGCCTGAAGCCCGAAATCGTCGATGCACCGGATTTCTTCGACGTGATGATCAAGGCGG TGCAGCAGCCGTCCGGCAGCGGGCTGACCTGGTGCAACGACACCAAGTACAAGATCATGGCAGCGGTCGCCGAAGACGAC GGCAAGACCATCACCAGCCGCGGCTGGTACGGCGTCGCGCCCGGCCAGTGCCTGCGCCCCGACCTCGGCGCCCAGCCGAA GCGGGTGTTCAGCTTCGCCGAAGCGGTCGACAGTAGCGGCCGGCCGGTCACCATCAAGGGCCGCGCGCTCAACTGGGGCG GCGGCACCACGCTGTGCACGCGCGACAGCAAGTTCGAGCTCGGCGAGCAGGGAGATTGCGCGGCCCGCGGCCTCGCCGCC ACCGGCTTCGCCGCCATTGATCTAAGTAGCGGCAAGACATTGAGGTTGTCCGCACCATGA
Upstream 100 bases:
>100_bases GCGGGGCGGCGGCGATAACATCCGTCATGGCCGGGCTCGTCCCGGCCATCCACGTCTTTCCGGCGGTTTCCTCAGCAAGA CGTGGATCAGCAAGACGTGG
Downstream 100 bases:
>100_bases TGCAGCTCGGCAAGCGCGGCTTCGATCACATCGAGACCTGGGTTTTCGACCTCGACAACACGCTGTACCCGCATCATCTC AATCTGTGGCAGCAGGTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MPGTRPGMTGWRSRALATIVTTLSLTSAAHADLKLCNRMSYVVETAIGVDSNGTTASRGWLRIDPAQCRVVVQGALNADR IMLNARALPVYGVSPLPQNGTDRLCIAEDNFVIAAARQCRGGQTLAAFTEIKPTDTEDGNKIAYLAEDSGYDDEQAKLAA IQRLLVIAGYDASPIDGVDGPKTQAALSAFLKSRGLKPEIVDAPDFFDVMIKAVQQPSGSGLTWCNDTKYKIMAAVAEDD GKTITSRGWYGVAPGQCLRPDLGAQPKRVFSFAEAVDSSGRPVTIKGRALNWGGGTTLCTRDSKFELGEQGDCAARGLAA TGFAAIDLSSGKTLRLSAP
Sequences:
>Translated_339_residues MPGTRPGMTGWRSRALATIVTTLSLTSAAHADLKLCNRMSYVVETAIGVDSNGTTASRGWLRIDPAQCRVVVQGALNADR IMLNARALPVYGVSPLPQNGTDRLCIAEDNFVIAAARQCRGGQTLAAFTEIKPTDTEDGNKIAYLAEDSGYDDEQAKLAA IQRLLVIAGYDASPIDGVDGPKTQAALSAFLKSRGLKPEIVDAPDFFDVMIKAVQQPSGSGLTWCNDTKYKIMAAVAEDD GKTITSRGWYGVAPGQCLRPDLGAQPKRVFSFAEAVDSSGRPVTIKGRALNWGGGTTLCTRDSKFELGEQGDCAARGLAA TGFAAIDLSSGKTLRLSAP >Mature_338_residues PGTRPGMTGWRSRALATIVTTLSLTSAAHADLKLCNRMSYVVETAIGVDSNGTTASRGWLRIDPAQCRVVVQGALNADRI MLNARALPVYGVSPLPQNGTDRLCIAEDNFVIAAARQCRGGQTLAAFTEIKPTDTEDGNKIAYLAEDSGYDDEQAKLAAI QRLLVIAGYDASPIDGVDGPKTQAALSAFLKSRGLKPEIVDAPDFFDVMIKAVQQPSGSGLTWCNDTKYKIMAAVAEDDG KTITSRGWYGVAPGQCLRPDLGAQPKRVFSFAEAVDSSGRPVTIKGRALNWGGGTTLCTRDSKFELGEQGDCAARGLAAT GFAAIDLSSGKTLRLSAP
Specific function: Unknown
COG id: COG5480
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35848; Mature: 35717
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGTRPGMTGWRSRALATIVTTLSLTSAAHADLKLCNRMSYVVETAIGVDSNGTTASRGW CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE LRIDPAQCRVVVQGALNADRIMLNARALPVYGVSPLPQNGTDRLCIAEDNFVIAAARQCR EEECHHHEEEEEECCCCCCEEEEEEEECEEECCCCCCCCCCCCEEEECCCEEEEEEHHCC GGQTLAAFTEIKPTDTEDGNKIAYLAEDSGYDDEQAKLAAIQRLLVIAGYDASPIDGVDG CCCEEEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCC PKTQAALSAFLKSRGLKPEIVDAPDFFDVMIKAVQQPSGSGLTWCNDTKYKIMAAVAEDD CHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHCCCCCCCEEECCCCEEEEEEEECCC GKTITSRGWYGVAPGQCLRPDLGAQPKRVFSFAEAVDSSGRPVTIKGRALNWGGGTTLCT CCEEECCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCEEECCCCCEEEE RDSKFELGEQGDCAARGLAATGFAAIDLSSGKTLRLSAP CCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCEEEEECC >Mature Secondary Structure PGTRPGMTGWRSRALATIVTTLSLTSAAHADLKLCNRMSYVVETAIGVDSNGTTASRGW CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE LRIDPAQCRVVVQGALNADRIMLNARALPVYGVSPLPQNGTDRLCIAEDNFVIAAARQCR EEECHHHEEEEEECCCCCCEEEEEEEECEEECCCCCCCCCCCCEEEECCCEEEEEEHHCC GGQTLAAFTEIKPTDTEDGNKIAYLAEDSGYDDEQAKLAAIQRLLVIAGYDASPIDGVDG CCCEEEEEEECCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEEEEECCCCCCCCCCCC PKTQAALSAFLKSRGLKPEIVDAPDFFDVMIKAVQQPSGSGLTWCNDTKYKIMAAVAEDD CHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHHHHCCCCCCCEEECCCCEEEEEEEECCC GKTITSRGWYGVAPGQCLRPDLGAQPKRVFSFAEAVDSSGRPVTIKGRALNWGGGTTLCT CCEEECCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCEEECCCCCEEEE RDSKFELGEQGDCAARGLAATGFAAIDLSSGKTLRLSAP CCCCCCCCCCCCHHHCCCCCCCEEEEEECCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA