| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is glnD [H]
Identifier: 192289024
GI number: 192289024
Start: 648096
End: 650897
Strand: Reverse
Name: glnD [H]
Synonym: Rpal_0594
Alternate gene names: 192289024
Gene position: 650897-648096 (Counterclockwise)
Preceding gene: 192289028
Following gene: 192289023
Centisome position: 11.33
GC content: 66.17
Gene sequence:
>2802_bases ATGGACAAAGTCGTGTCACCTCCCCGCCCCGCCCCCGACGATCGCTTCGACAGCGCCCGCGTCGCCGCCGAAATCGCAAC GCTGGCCGAAAAACACACCGGCAACGACGCGGCGTTCCGCACCGCGCTGGCGATGCTGATGAAGGCGGAGCTGGCCAAAG CCCGCACCGAGGCCGAAGCGCAGTTGCTGCGCGACCGCCACGGCCGGCGCTGCGCCGAGCGGCTGTGCTACGTCCAGGAC GCGATCATCCGGCTGCTGTTCAACGCCGCAACTGAATACCTCTACAACACCCCGACGCCCTCGAGCTCGGAACGGATGAC GGTGGTGGCGACCGGCGGCTACGGCCGCGGCCTGATGGCGCCGGAGAGCGACATCGACCTGCTGTTCATCCTGCCCTACA AGCAGACCGCCTGGGGCGAGCAGGTCGCCGAAGTCATCCTGTACTGCCTGTGGGACATCGGGCTGAAAGTCGGCCATGCC ACCCGCTCGGTCGACGAGTGCATCCGCCAGGCGCGCGCCGACATGACGATCCGCACCGCGATCCTGGAGACGCGGTTTCT GGCCGGCGACGAGGCGCTGTACGCCGAGCTGGTGGAGCGTTTCGACAAGGAGGTGGTCGAGGGCACCGCGGCCGAATTCG TCGCCGCCAAGCTCGCCGAGCGCGAGGAGCGCCACCGCCGCTCCGGCCAGTCACGCTATCTGGTCGAGCCCAACGTCAAG GACGGCAAGGGTGGCCTGCGCGACCTGCACACGCTGTTCTGGATCGCCAAATACGTCTACCGGGTTCGCGAAGCCAGCGA GCTGTCCGAGCGCGGCGTGTTCGATCCGGCCGAATTCCGCACGTTCCGCCGCTGCGAAGACTTCCTGTGGTCGGTCCGCT GCAACATTCACTTCGTGACCAAGCGCGCCGAAGACCGGCTGTCGTTCGATCTGCAGCGCGAGATCGGCGTGCGGCTCGGC TACACCTCGCATCCGGGAATGCAGGACGTCGAGCGCTTCATGAAGCACTACTTCCTGATCGCCAAGGAAGTCGGCAACCT CACCGCGATCCTGTGCGCCAAGCTGGAGGATCAGCAGGCCAAGGCGGCGCCGGCGCTGACCCGAATGATGGCGCGGCTGC GGCCCGCCGCCAAGCGCCGCCGGGTGCCGGAGAGCGACGATTTCGTCATCGACAATAACCGCATCAATCTGGCAGTGCCG GACGTGTTCAAGCACGATCCGGTCAATCTGATCCGGATATTCCGGCTGGCGCAGAAGAACAATCTCGCCTTCCACCCGGA CGCGATGCGCAGCGTGACGCGGTCGCTGTCGCTGATTACGCCGCAGCTTCGCGACAATCCCGAAGCCAACCGGCTGTTCG TCGAGATCCTGACTTCCGACAACGCCGAGCCGGTGCTGCGGCGGATGAACGAGACCGGCGTGCTCGGCCGCTTCATCCGC GCCTTCGGTCGCATCGTGTCGATGATGCAGTTCAACATGTATCACAGCTACACGGTGGACGAGCATTTGATCCGCTGCGT CGGCAATCTGCAGGAGATCGAACGCGGCGGGAACGATGAGTTCGCGCTGTCGTCGGAGCTGATCCGGAAGATCAGGCCCG ATCACCGTGCGGTGCTGTATGCCGCGGTGCTGCTGCACGATATCGCCAAGGGCCAGCCCGAGGATCACTCCACCGCCGGC GCCAAGGTGGCGCGGCGGCTGTGCCCGCGCTTCGGCTTCAGCACCGCCGACACCGAGCTGGTGGCGTGGCTGATCGAGAA GCATCTGGTGATGTCCACGGTGGCGCAGTCGCGCGACCTGTCGGACCGCAAGACCATCGAGAATTTCGCCGCGGTGGTCG AGACCGTCGAGCAGATGAAGATGCTCACCATCCTGACCACCGCCGACATCCGCGGCGTCGGTCCGGGGGTGTGGAACGGC TGGAAGGCGCAGTTGATCCGGACCTTGTACTACGAGACCGAGCCGGTGCTGACCGGCGGCTTCTCGGAAGTGAACCGCGC CGAGCGCATCCGCGCCGCGCAAGCCGAATTCCGCGCCGCCTTCACCGAATGGCCGGAGGCCGACCTCAATGCCTATGTGG CGCGGCACTATCCGGCGTACTGGCTGAAGGTCGATCTGCAGCGCAAGATCCGCCATGCCCGCTTCCTGCGCGCCTCCGAA CAGGCCGGCCATAAGCTGGCGATCAATGTCGGCTTCGACGAAGCCCGCGCCGTCACCGAACTCACCATCCTGGCGGTCGA CCATCCGTGGTTGCTGTCGGTGATCGCGGGCGCTTGTGCCAGCGCCGGCGCCAACATCGTCGACGCCCAGATCTACACCA CGACCGACGGCCGCGCGCTCGACACTATCTCGATCAGCCGCGAATACGACCGCGACGAGGACGAGGGGCGCCGCGCCACC CGCATCGGCGAGACCATCGAAGAGGTACTCGAAGGCAAGCTGCGGCTACCCGAGGCGGTCGCACGCCGCGCGAGCAGCGG CAGCAAGGCCAAGCTGCGCGCCTTCGTGGTCGAGCCCGAGGTCGAGATCAACAACAACTGGTCCGACCGCTATACGGTGA TCGAAGTCAGCGGCCTCGATCGCCCGGGCCTGCTGTACCAGCTCACCACGGCGATCTCGAAACTCAACCTCAACATCGCC TCGGCGCATGTCGCGACCTTCGGCGAACGTGCCCGCGACGTGTTCTACGTGACCGATTTGTTAGGTGCGCAGATCACCGC TCCGACCCGCCAGGCGGCGATCAAGCGGGCGCTGGTGCACCTGCTGGCCAACGGCGACGCCGCCGAAAAGCCGGCGGCTT GA
Upstream 100 bases:
>100_bases TTGCAGGCGCCTATGCTGGCTGGGCCAAGGCCGCCTCCGCAGTTACCCTTGGGTGGAATTCCGTGACAGCAGCGTTGCCG TCCGATATCCGGAAATAGCC
Downstream 100 bases:
>100_bases CCGCATCGGGTGCCTTGATCACGCCCGCTTCGCACGTATCTGATCAGGCGTCCTATCCGGGCGCCGGTACCCCCTTCACG GGAACCGATGGCGACCGCGG
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 933; Mature: 933
Protein sequence:
>933_residues MDKVVSPPRPAPDDRFDSARVAAEIATLAEKHTGNDAAFRTALAMLMKAELAKARTEAEAQLLRDRHGRRCAERLCYVQD AIIRLLFNAATEYLYNTPTPSSSERMTVVATGGYGRGLMAPESDIDLLFILPYKQTAWGEQVAEVILYCLWDIGLKVGHA TRSVDECIRQARADMTIRTAILETRFLAGDEALYAELVERFDKEVVEGTAAEFVAAKLAEREERHRRSGQSRYLVEPNVK DGKGGLRDLHTLFWIAKYVYRVREASELSERGVFDPAEFRTFRRCEDFLWSVRCNIHFVTKRAEDRLSFDLQREIGVRLG YTSHPGMQDVERFMKHYFLIAKEVGNLTAILCAKLEDQQAKAAPALTRMMARLRPAAKRRRVPESDDFVIDNNRINLAVP DVFKHDPVNLIRIFRLAQKNNLAFHPDAMRSVTRSLSLITPQLRDNPEANRLFVEILTSDNAEPVLRRMNETGVLGRFIR AFGRIVSMMQFNMYHSYTVDEHLIRCVGNLQEIERGGNDEFALSSELIRKIRPDHRAVLYAAVLLHDIAKGQPEDHSTAG AKVARRLCPRFGFSTADTELVAWLIEKHLVMSTVAQSRDLSDRKTIENFAAVVETVEQMKMLTILTTADIRGVGPGVWNG WKAQLIRTLYYETEPVLTGGFSEVNRAERIRAAQAEFRAAFTEWPEADLNAYVARHYPAYWLKVDLQRKIRHARFLRASE QAGHKLAINVGFDEARAVTELTILAVDHPWLLSVIAGACASAGANIVDAQIYTTTDGRALDTISISREYDRDEDEGRRAT RIGETIEEVLEGKLRLPEAVARRASSGSKAKLRAFVVEPEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIA SAHVATFGERARDVFYVTDLLGAQITAPTRQAAIKRALVHLLANGDAAEKPAA
Sequences:
>Translated_933_residues MDKVVSPPRPAPDDRFDSARVAAEIATLAEKHTGNDAAFRTALAMLMKAELAKARTEAEAQLLRDRHGRRCAERLCYVQD AIIRLLFNAATEYLYNTPTPSSSERMTVVATGGYGRGLMAPESDIDLLFILPYKQTAWGEQVAEVILYCLWDIGLKVGHA TRSVDECIRQARADMTIRTAILETRFLAGDEALYAELVERFDKEVVEGTAAEFVAAKLAEREERHRRSGQSRYLVEPNVK DGKGGLRDLHTLFWIAKYVYRVREASELSERGVFDPAEFRTFRRCEDFLWSVRCNIHFVTKRAEDRLSFDLQREIGVRLG YTSHPGMQDVERFMKHYFLIAKEVGNLTAILCAKLEDQQAKAAPALTRMMARLRPAAKRRRVPESDDFVIDNNRINLAVP DVFKHDPVNLIRIFRLAQKNNLAFHPDAMRSVTRSLSLITPQLRDNPEANRLFVEILTSDNAEPVLRRMNETGVLGRFIR AFGRIVSMMQFNMYHSYTVDEHLIRCVGNLQEIERGGNDEFALSSELIRKIRPDHRAVLYAAVLLHDIAKGQPEDHSTAG AKVARRLCPRFGFSTADTELVAWLIEKHLVMSTVAQSRDLSDRKTIENFAAVVETVEQMKMLTILTTADIRGVGPGVWNG WKAQLIRTLYYETEPVLTGGFSEVNRAERIRAAQAEFRAAFTEWPEADLNAYVARHYPAYWLKVDLQRKIRHARFLRASE QAGHKLAINVGFDEARAVTELTILAVDHPWLLSVIAGACASAGANIVDAQIYTTTDGRALDTISISREYDRDEDEGRRAT RIGETIEEVLEGKLRLPEAVARRASSGSKAKLRAFVVEPEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIA SAHVATFGERARDVFYVTDLLGAQITAPTRQAAIKRALVHLLANGDAAEKPAA >Mature_933_residues MDKVVSPPRPAPDDRFDSARVAAEIATLAEKHTGNDAAFRTALAMLMKAELAKARTEAEAQLLRDRHGRRCAERLCYVQD AIIRLLFNAATEYLYNTPTPSSSERMTVVATGGYGRGLMAPESDIDLLFILPYKQTAWGEQVAEVILYCLWDIGLKVGHA TRSVDECIRQARADMTIRTAILETRFLAGDEALYAELVERFDKEVVEGTAAEFVAAKLAEREERHRRSGQSRYLVEPNVK DGKGGLRDLHTLFWIAKYVYRVREASELSERGVFDPAEFRTFRRCEDFLWSVRCNIHFVTKRAEDRLSFDLQREIGVRLG YTSHPGMQDVERFMKHYFLIAKEVGNLTAILCAKLEDQQAKAAPALTRMMARLRPAAKRRRVPESDDFVIDNNRINLAVP DVFKHDPVNLIRIFRLAQKNNLAFHPDAMRSVTRSLSLITPQLRDNPEANRLFVEILTSDNAEPVLRRMNETGVLGRFIR AFGRIVSMMQFNMYHSYTVDEHLIRCVGNLQEIERGGNDEFALSSELIRKIRPDHRAVLYAAVLLHDIAKGQPEDHSTAG AKVARRLCPRFGFSTADTELVAWLIEKHLVMSTVAQSRDLSDRKTIENFAAVVETVEQMKMLTILTTADIRGVGPGVWNG WKAQLIRTLYYETEPVLTGGFSEVNRAERIRAAQAEFRAAFTEWPEADLNAYVARHYPAYWLKVDLQRKIRHARFLRASE QAGHKLAINVGFDEARAVTELTILAVDHPWLLSVIAGACASAGANIVDAQIYTTTDGRALDTISISREYDRDEDEGRRAT RIGETIEEVLEGKLRLPEAVARRASSGSKAKLRAFVVEPEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIA SAHVATFGERARDVFYVTDLLGAQITAPTRQAAIKRALVHLLANGDAAEKPAA
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=807, Percent_Identity=32.7137546468402, Blast_Score=391, Evalue=1e-109,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 105007; Mature: 105007
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKVVSPPRPAPDDRFDSARVAAEIATLAEKHTGNDAAFRTALAMLMKAELAKARTEAEA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH QLLRDRHGRRCAERLCYVQDAIIRLLFNAATEYLYNTPTPSSSERMTVVATGGYGRGLMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCC PESDIDLLFILPYKQTAWGEQVAEVILYCLWDIGLKVGHATRSVDECIRQARADMTIRTA CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHH ILETRFLAGDEALYAELVERFDKEVVEGTAAEFVAAKLAEREERHRRSGQSRYLVEPNVK HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC DGKGGLRDLHTLFWIAKYVYRVREASELSERGVFDPAEFRTFRRCEDFLWSVRCNIHFVT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEEEEE KRAEDRLSFDLQREIGVRLGYTSHPGMQDVERFMKHYFLIAKEVGNLTAILCAKLEDQQA CCCHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH KAAPALTRMMARLRPAAKRRRVPESDDFVIDNNRINLAVPDVFKHDPVNLIRIFRLAQKN HHHHHHHHHHHHHCHHHHHCCCCCCCCEEEECCEEEEEECCHHCCCCHHHHHHHHHHHCC NLAFHPDAMRSVTRSLSLITPQLRDNPEANRLFVEILTSDNAEPVLRRMNETGVLGRFIR CCCCCCHHHHHHHHHHHHHCCHHCCCCCCCEEEEEEECCCCHHHHHHHHCCCHHHHHHHH AFGRIVSMMQFNMYHSYTVDEHLIRCVGNLQEIERGGNDEFALSSELIRKIRPDHRAVLY HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHH AAVLLHDIAKGQPEDHSTAGAKVARRLCPRFGFSTADTELVAWLIEKHLVMSTVAQSRDL HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC SDRKTIENFAAVVETVEQMKMLTILTTADIRGVGPGVWNGWKAQLIRTLYYETEPVLTGG CHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECC FSEVNRAERIRAAQAEFRAAFTEWPEADLNAYVARHYPAYWLKVDLQRKIRHARFLRASE HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHH QAGHKLAINVGFDEARAVTELTILAVDHPWLLSVIAGACASAGANIVDAQIYTTTDGRAL CCCCEEEEEECCHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEE DTISISREYDRDEDEGRRATRIGETIEEVLEGKLRLPEAVARRASSGSKAKLRAFVVEPE EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEEECCC VEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDL EEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH LGAQITAPTRQAAIKRALVHLLANGDAAEKPAA HCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MDKVVSPPRPAPDDRFDSARVAAEIATLAEKHTGNDAAFRTALAMLMKAELAKARTEAEA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH QLLRDRHGRRCAERLCYVQDAIIRLLFNAATEYLYNTPTPSSSERMTVVATGGYGRGLMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCC PESDIDLLFILPYKQTAWGEQVAEVILYCLWDIGLKVGHATRSVDECIRQARADMTIRTA CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHH ILETRFLAGDEALYAELVERFDKEVVEGTAAEFVAAKLAEREERHRRSGQSRYLVEPNVK HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC DGKGGLRDLHTLFWIAKYVYRVREASELSERGVFDPAEFRTFRRCEDFLWSVRCNIHFVT CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEEEEE KRAEDRLSFDLQREIGVRLGYTSHPGMQDVERFMKHYFLIAKEVGNLTAILCAKLEDQQA CCCHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH KAAPALTRMMARLRPAAKRRRVPESDDFVIDNNRINLAVPDVFKHDPVNLIRIFRLAQKN HHHHHHHHHHHHHCHHHHHCCCCCCCCEEEECCEEEEEECCHHCCCCHHHHHHHHHHHCC NLAFHPDAMRSVTRSLSLITPQLRDNPEANRLFVEILTSDNAEPVLRRMNETGVLGRFIR CCCCCCHHHHHHHHHHHHHCCHHCCCCCCCEEEEEEECCCCHHHHHHHHCCCHHHHHHHH AFGRIVSMMQFNMYHSYTVDEHLIRCVGNLQEIERGGNDEFALSSELIRKIRPDHRAVLY HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHH AAVLLHDIAKGQPEDHSTAGAKVARRLCPRFGFSTADTELVAWLIEKHLVMSTVAQSRDL HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC SDRKTIENFAAVVETVEQMKMLTILTTADIRGVGPGVWNGWKAQLIRTLYYETEPVLTGG CHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEECC FSEVNRAERIRAAQAEFRAAFTEWPEADLNAYVARHYPAYWLKVDLQRKIRHARFLRASE HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHH QAGHKLAINVGFDEARAVTELTILAVDHPWLLSVIAGACASAGANIVDAQIYTTTDGRAL CCCCEEEEEECCHHHHHHHEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEE DTISISREYDRDEDEGRRATRIGETIEEVLEGKLRLPEAVARRASSGSKAKLRAFVVEPE EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCEEEEEEECCC VEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTDL EEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH LGAQITAPTRQAAIKRALVHLLANGDAAEKPAA HCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA