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The map label for this gene is ctpA [H]

Identifier: 192289023

GI number: 192289023

Start: 646592

End: 647932

Strand: Reverse

Name: ctpA [H]

Synonym: Rpal_0593

Alternate gene names: 192289023

Gene position: 647932-646592 (Counterclockwise)

Preceding gene: 192289024

Following gene: 192289021

Centisome position: 11.28

GC content: 68.08

Gene sequence:

>1341_bases
ATGCGCAAAATCGTCGTCCGCTCGCTTGCCGTCCTCGGCGTCGTCGCGGTTCCCGTCGTCTCCGCGCTCGCCCTGCAGCG
CGAGCAGACCGCCCCGGCCGATCTCGACCTGATCGGCGGCGTGATCCAGCTGGTGCAGCGCGCCTACGTCCATCCGATCC
CCTCGGACGAGCTGACCAAGGATGCCCTGAAGGGCCTGCTGAACCGGCTCGATCCGCATTCGGACTACATGGACGAGAAG
GAATTCAAGGACATGCAGACCGACATGTCGGGCCAATTCGGCGGCCTCGGCATGCAGATCACCGCTCAGGGCGGGATTCC
GCGAATCGTGTCGCCGATCGACGGCACCCCGGCGGCGCGCGCCAAGCTCGAGCCGGGCGACCTGATCATCAAGGTCGGCA
CCGCCACCACTCAGGGCATGAGCCTGCGTAACGTCGTCGACATGCTGCGCGGCGCGCCCGGCACCAAGGTCACCATCACG
GTGCTGCGCGGCAAGGACGAGCCGTTCGACGTTACCCTGACCCGTGAAATCATCCGCGTCGCTTCGGTGAAGTCGGAGAT
CAAGCCGGACGGCGTCGGCTACATCCGCATCAGCCAGTTCGGCGCCGACACCGCCGACGGCTTCACCGCCGCGCTCACCA
AGCTGAAAAGCGACGCCAAGGACGGCGGCCTCAAGGGGCTGGTGATCGACCTGCGCAACGATCCGGGCGGGCTGCTCAAC
GCCGCCGTCTCGGTGGCGGGCGACCTGCTCGACGGCGGCACCGTGGTGTCGATCCGCGGCCGCCAGGCCGACGACCAGCG
AGTGTTCTCCGCGCCGTCGAAGGGCGACAAACTGCCGGGCGTGCCGATCGTGGTGCTGATCAACGGCGCCTCGGCGTCGG
CGTCGGAGATTGTTGCCGGCGCGCTGCAGGACCGCAAGCGCGCCACCGTGATGGGCACCACCAGCTTCGGCAAGGGCTCG
GTGCAGACTGTGATTCCGATCAAGGGTCACGGCGCGGTGCGGCTGACCACGGCGCTGTACTACACGCCGGCCGGCCGCTC
GATCCAGGACGAGGGCATCGTGCCCGACGTGATCGAAGAGGCGCCGAAGGATCAGCAGATCAGCGGCGGCCCGCTGATCC
GCGAAAGCGCGCTGCACGGCGCGATCGCCAATCCGGGCCAACTCGGCAAGTCGGACGCCAGCGCCACCAAGGCGACGCCG
AAGACCGGCGAGCCGACCGACGACAAGACCAAGTCCGCGACCTCGGCGCCGATCAAGGCGGATCTGATCGGCAAGCCCGA
AGACGCCCAGCTCAACGCTGCGCTGGCGCTGGTCCTGAAGAAGGACGCGGCACCGAAGTAA

Upstream 100 bases:

>100_bases
CCGGTACCCCCTTCACGGGAACCGATGGCGACCGCGGTCGGTTCTGGTTCCGCAACGCCACCACGGCGGCAATTTTCCGC
CCCTTCACATGAGTTAGTCC

Downstream 100 bases:

>100_bases
CAACCAGCGCACAAACGCAGCGGTCCGCCTGATACACGTGATGCCCGGCCTTTGCGCCGGGCATCGACGTTTTGATCTGA
CCTTGCTCTTCAAGACGTGG

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MRKIVVRSLAVLGVVAVPVVSALALQREQTAPADLDLIGGVIQLVQRAYVHPIPSDELTKDALKGLLNRLDPHSDYMDEK
EFKDMQTDMSGQFGGLGMQITAQGGIPRIVSPIDGTPAARAKLEPGDLIIKVGTATTQGMSLRNVVDMLRGAPGTKVTIT
VLRGKDEPFDVTLTREIIRVASVKSEIKPDGVGYIRISQFGADTADGFTAALTKLKSDAKDGGLKGLVIDLRNDPGGLLN
AAVSVAGDLLDGGTVVSIRGRQADDQRVFSAPSKGDKLPGVPIVVLINGASASASEIVAGALQDRKRATVMGTTSFGKGS
VQTVIPIKGHGAVRLTTALYYTPAGRSIQDEGIVPDVIEEAPKDQQISGGPLIRESALHGAIANPGQLGKSDASATKATP
KTGEPTDDKTKSATSAPIKADLIGKPEDAQLNAALALVLKKDAAPK

Sequences:

>Translated_446_residues
MRKIVVRSLAVLGVVAVPVVSALALQREQTAPADLDLIGGVIQLVQRAYVHPIPSDELTKDALKGLLNRLDPHSDYMDEK
EFKDMQTDMSGQFGGLGMQITAQGGIPRIVSPIDGTPAARAKLEPGDLIIKVGTATTQGMSLRNVVDMLRGAPGTKVTIT
VLRGKDEPFDVTLTREIIRVASVKSEIKPDGVGYIRISQFGADTADGFTAALTKLKSDAKDGGLKGLVIDLRNDPGGLLN
AAVSVAGDLLDGGTVVSIRGRQADDQRVFSAPSKGDKLPGVPIVVLINGASASASEIVAGALQDRKRATVMGTTSFGKGS
VQTVIPIKGHGAVRLTTALYYTPAGRSIQDEGIVPDVIEEAPKDQQISGGPLIRESALHGAIANPGQLGKSDASATKATP
KTGEPTDDKTKSATSAPIKADLIGKPEDAQLNAALALVLKKDAAPK
>Mature_446_residues
MRKIVVRSLAVLGVVAVPVVSALALQREQTAPADLDLIGGVIQLVQRAYVHPIPSDELTKDALKGLLNRLDPHSDYMDEK
EFKDMQTDMSGQFGGLGMQITAQGGIPRIVSPIDGTPAARAKLEPGDLIIKVGTATTQGMSLRNVVDMLRGAPGTKVTIT
VLRGKDEPFDVTLTREIIRVASVKSEIKPDGVGYIRISQFGADTADGFTAALTKLKSDAKDGGLKGLVIDLRNDPGGLLN
AAVSVAGDLLDGGTVVSIRGRQADDQRVFSAPSKGDKLPGVPIVVLINGASASASEIVAGALQDRKRATVMGTTSFGKGS
VQTVIPIKGHGAVRLTTALYYTPAGRSIQDEGIVPDVIEEAPKDQQISGGPLIRESALHGAIANPGQLGKSDASATKATP
KTGEPTDDKTKSATSAPIKADLIGKPEDAQLNAALALVLKKDAAPK

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=332, Percent_Identity=32.2289156626506, Blast_Score=127, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 46399; Mature: 46399

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIVVRSLAVLGVVAVPVVSALALQREQTAPADLDLIGGVIQLVQRAYVHPIPSDELTK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
DALKGLLNRLDPHSDYMDEKEFKDMQTDMSGQFGGLGMQITAQGGIPRIVSPIDGTPAAR
HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
AKLEPGDLIIKVGTATTQGMSLRNVVDMLRGAPGTKVTITVLRGKDEPFDVTLTREIIRV
CCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEHHHHHHHHH
ASVKSEIKPDGVGYIRISQFGADTADGFTAALTKLKSDAKDGGLKGLVIDLRNDPGGLLN
HHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHH
AAVSVAGDLLDGGTVVSIRGRQADDQRVFSAPSKGDKLPGVPIVVLINGASASASEIVAG
HHHHHHHHHCCCCEEEEEECCCCCCCHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHH
ALQDRKRATVMGTTSFGKGSVQTVIPIKGHGAVRLTTALYYTPAGRSIQDEGIVPDVIEE
HHHCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHH
APKDQQISGGPLIRESALHGAIANPGQLGKSDASATKATPKTGEPTDDKTKSATSAPIKA
CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
DLIGKPEDAQLNAALALVLKKDAAPK
ECCCCCCCCHHHHEEEEEEECCCCCC
>Mature Secondary Structure
MRKIVVRSLAVLGVVAVPVVSALALQREQTAPADLDLIGGVIQLVQRAYVHPIPSDELTK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH
DALKGLLNRLDPHSDYMDEKEFKDMQTDMSGQFGGLGMQITAQGGIPRIVSPIDGTPAAR
HHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
AKLEPGDLIIKVGTATTQGMSLRNVVDMLRGAPGTKVTITVLRGKDEPFDVTLTREIIRV
CCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEHHHHHHHHH
ASVKSEIKPDGVGYIRISQFGADTADGFTAALTKLKSDAKDGGLKGLVIDLRNDPGGLLN
HHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHH
AAVSVAGDLLDGGTVVSIRGRQADDQRVFSAPSKGDKLPGVPIVVLINGASASASEIVAG
HHHHHHHHHCCCCEEEEEECCCCCCCHHCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHH
ALQDRKRATVMGTTSFGKGSVQTVIPIKGHGAVRLTTALYYTPAGRSIQDEGIVPDVIEE
HHHCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCHHHHH
APKDQQISGGPLIRESALHGAIANPGQLGKSDASATKATPKTGEPTDDKTKSATSAPIKA
CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
DLIGKPEDAQLNAALALVLKKDAAPK
ECCCCCCCCHHHHEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]