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The map label for this gene is yagA [H]

Identifier: 192289028

GI number: 192289028

Start: 653392

End: 654561

Strand: Reverse

Name: yagA [H]

Synonym: Rpal_0598

Alternate gene names: 192289028

Gene position: 654561-653392 (Counterclockwise)

Preceding gene: 192289029

Following gene: 192289024

Centisome position: 11.4

GC content: 65.04

Gene sequence:

>1170_bases
ATGCCCTGGCGTGAGGTGTCGGCAGTGGATCAGAGACGAGAGTTCGTCCGGCTTGCGATGCAGGAGGGAGCGAACCGGCG
GGAGTTGTGCCGGCGGTTCGGCATTCATTGGACGACCGGCTACAAATGGTTGGAGCGATGCGCGGCCGGAGGTGATGTCG
TCGACCTATCGCGGCGGCCGCACGAAAGCCCGCGGCAAACCTCGGCGGCGTGCGAGGCACAGGTGCTGGCGGTTCGCGAT
GCGCATCCGGCGTGGGGGGCGCGCAAGATCGCTAGCTCGATGAAGCGGTCCGGACACAGCGCTCCGGCGGTGTCGACGAT
CCACGAGATCCTGCGCCGGCACGGCCGGATCAAGCCTGCCGCCGGCGGTCCACCGGCGACGCTGCGGTTCGAGATGCCGG
CGCCGAACATGCTTTGGCAGATGGACTTCAAAGGCTGGGTTCGGCTCGGCAACGACGTCCGCTGCCATCCGCTGACCGTG
GTGGACGATCACTCACGCTACGATCTGTGCCTCCAGGCTTGCGCCGATCAGCGCGGCGAAACCGTGCAGGACAGGCTGCA
AACGACGTTCCGGCACTACGGCTTGCCCGACACGATCTTCGTCGACAACGGCTCGCCGTGGTCGGATAGTTCCGGCGAGC
GTTGGACATGGTTCTCGGTGTGGCTGCTCAAGCTCGGCATCAGGGTGATCCGTAGTCGTCCCTATCACCCGCAGAGCCGC
GGCAAGAACGAGCGTTTTCATCGCACGCTGGACGACGAGGTGTTTGCGCTGCGGCCCTTGCGCGACCTCGCCGAGGCGCA
ACGTGCCTTCGACTCCTGGCGCGAGGTGTACAACTTCGAGCGCCCTCACGAGTCGCTAGGCCAGCTGGTGCCTGCTGATC
GCTACCAGCCGAGCCGGCGTTCTCTGCCGGACCGCCTGCCGGCTCCAGAATACGATGAGCGCGACATCGTCCGCTCCGTC
CCGAAAACCAAGGCCTATGTCAGCTTCAAAGGTCGTTTGTGGAAGGTGCCGCAAGCCTTCGCCGGAGAGCGCTTGGCCAT
CAGGCCGCTCTCCACCGACGGCAAATACGGCGTGTTCTTCGCCGCCCACCAAGTCGCCACCATCGACTTGACGGGCGGAA
AAGGTGTCGGTCATGTCTCCGAACACGTGTCGACTATGTCTCCGGGCTGA

Upstream 100 bases:

>100_bases
CGCCGGGCTTGATGTTCAGCCCGGAGACATGACCTACGGGTGTTCGGAGACATAGTCGACGCATCATAGTGGCTGGATTT
GGCGGTTGGAGGCCAAGTCC

Downstream 100 bases:

>100_bases
ACACTTGACCCGGCGATCCATCCCTCTTCGCAAGACGATGGATGCGCGGGCCTTCGCCGCGCCGAAGGGGCTTCGGCCCC
GCAGGCGGGTCAAGCCCCCG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MPWREVSAVDQRREFVRLAMQEGANRRELCRRFGIHWTTGYKWLERCAAGGDVVDLSRRPHESPRQTSAACEAQVLAVRD
AHPAWGARKIASSMKRSGHSAPAVSTIHEILRRHGRIKPAAGGPPATLRFEMPAPNMLWQMDFKGWVRLGNDVRCHPLTV
VDDHSRYDLCLQACADQRGETVQDRLQTTFRHYGLPDTIFVDNGSPWSDSSGERWTWFSVWLLKLGIRVIRSRPYHPQSR
GKNERFHRTLDDEVFALRPLRDLAEAQRAFDSWREVYNFERPHESLGQLVPADRYQPSRRSLPDRLPAPEYDERDIVRSV
PKTKAYVSFKGRLWKVPQAFAGERLAIRPLSTDGKYGVFFAAHQVATIDLTGGKGVGHVSEHVSTMSPG

Sequences:

>Translated_389_residues
MPWREVSAVDQRREFVRLAMQEGANRRELCRRFGIHWTTGYKWLERCAAGGDVVDLSRRPHESPRQTSAACEAQVLAVRD
AHPAWGARKIASSMKRSGHSAPAVSTIHEILRRHGRIKPAAGGPPATLRFEMPAPNMLWQMDFKGWVRLGNDVRCHPLTV
VDDHSRYDLCLQACADQRGETVQDRLQTTFRHYGLPDTIFVDNGSPWSDSSGERWTWFSVWLLKLGIRVIRSRPYHPQSR
GKNERFHRTLDDEVFALRPLRDLAEAQRAFDSWREVYNFERPHESLGQLVPADRYQPSRRSLPDRLPAPEYDERDIVRSV
PKTKAYVSFKGRLWKVPQAFAGERLAIRPLSTDGKYGVFFAAHQVATIDLTGGKGVGHVSEHVSTMSPG
>Mature_388_residues
PWREVSAVDQRREFVRLAMQEGANRRELCRRFGIHWTTGYKWLERCAAGGDVVDLSRRPHESPRQTSAACEAQVLAVRDA
HPAWGARKIASSMKRSGHSAPAVSTIHEILRRHGRIKPAAGGPPATLRFEMPAPNMLWQMDFKGWVRLGNDVRCHPLTVV
DDHSRYDLCLQACADQRGETVQDRLQTTFRHYGLPDTIFVDNGSPWSDSSGERWTWFSVWLLKLGIRVIRSRPYHPQSRG
KNERFHRTLDDEVFALRPLRDLAEAQRAFDSWREVYNFERPHESLGQLVPADRYQPSRRSLPDRLPAPEYDERDIVRSVP
KTKAYVSFKGRLWKVPQAFAGERLAIRPLSTDGKYGVFFAAHQVATIDLTGGKGVGHVSEHVSTMSPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=383, Percent_Identity=49.8694516971279, Blast_Score=356, Evalue=1e-99,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 44366; Mature: 44235

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWREVSAVDQRREFVRLAMQEGANRRELCRRFGIHWTTGYKWLERCAAGGDVVDLSRRP
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCCC
HESPRQTSAACEAQVLAVRDAHPAWGARKIASSMKRSGHSAPAVSTIHEILRRHGRIKPA
CCCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
AGGPPATLRFEMPAPNMLWQMDFKGWVRLGNDVRCHPLTVVDDHSRYDLCLQACADQRGE
CCCCCCEEEEECCCCCCEEEECCHHHHCCCCCCEECEEEEECCCCHHHHHHHHHHHCCCC
TVQDRLQTTFRHYGLPDTIFVDNGSPWSDSSGERWTWFSVWLLKLGIRVIRSRPYHPQSR
HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHC
GKNERFHRTLDDEVFALRPLRDLAEAQRAFDSWREVYNFERPHESLGQLVPADRYQPSRR
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHH
SLPDRLPAPEYDERDIVRSVPKTKAYVSFKGRLWKVPQAFAGERLAIRPLSTDGKYGVFF
CCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCEEECCHHHCCCEEEEEECCCCCCEEEEE
AAHQVATIDLTGGKGVGHVSEHVSTMSPG
EEEEEEEEEECCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
PWREVSAVDQRREFVRLAMQEGANRRELCRRFGIHWTTGYKWLERCAAGGDVVDLSRRP
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCCC
HESPRQTSAACEAQVLAVRDAHPAWGARKIASSMKRSGHSAPAVSTIHEILRRHGRIKPA
CCCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
AGGPPATLRFEMPAPNMLWQMDFKGWVRLGNDVRCHPLTVVDDHSRYDLCLQACADQRGE
CCCCCCEEEEECCCCCCEEEECCHHHHCCCCCCEECEEEEECCCCHHHHHHHHHHHCCCC
TVQDRLQTTFRHYGLPDTIFVDNGSPWSDSSGERWTWFSVWLLKLGIRVIRSRPYHPQSR
HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHC
GKNERFHRTLDDEVFALRPLRDLAEAQRAFDSWREVYNFERPHESLGQLVPADRYQPSRR
CCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHH
SLPDRLPAPEYDERDIVRSVPKTKAYVSFKGRLWKVPQAFAGERLAIRPLSTDGKYGVFF
CCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCEEECCHHHCCCEEEEEECCCCCCEEEEE
AAHQVATIDLTGGKGVGHVSEHVSTMSPG
EEEEEEEEEECCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]