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The map label for this gene is nifU [H]

Identifier: 190571643

GI number: 190571643

Start: 1344393

End: 1344776

Strand: Direct

Name: nifU [H]

Synonym: WPa_1268

Alternate gene names: 190571643

Gene position: 1344393-1344776 (Clockwise)

Preceding gene: 190571640

Following gene: 190571644

Centisome position: 90.69

GC content: 33.07

Gene sequence:

>384_bases
ATGAGTTATAATGAGAAAATTTTAGATCATTACGAAAATCCAAGGAATGTTGGTTCTCTGGATAAAAATGATCCAAATGT
TGGTACTGGTTTAGTTGGTGCACCATCATGCGGAGATGTAATGAAACTGCAAATAAAGGTCAACGATAAAGGTGTTATTG
AAGACGCAAAATTTAAAACTTTTGGTTGTGGTTCTGCTATAGCTTCAAGTTCTTTGCTTACAGAAATGATCAAAGGAAAA
ACTATTGAGAATGTAACAAAGATAAAGAATACTCAAATAGTGGAAGAATTGTCTTTGCCGCCAGTAAAGATACACTGTTC
AGTACTTGCTGAGGATGCTATAAAAGCTGCTATTCATGATTATCAAAATAAACAAAAACATTGA

Upstream 100 bases:

>100_bases
TATATATTTTGTGAGTAAAATGTACTGCTTGCTAGTGTATTTTACTTTAGTTTTTAACCTAAATATGTTATAATGTAAGT
AATGGTTTACGGGTAGTTCT

Downstream 100 bases:

>100_bases
GGAATATGAGTGAATTTCAAGGAGTAAATTCTGTTAAAAAACCTATCACTCTAACCGCAAATGCAGTAGAGAGGGTAAGG
TTTTTATTGGACAAAAAGAA

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MSYNEKILDHYENPRNVGSLDKNDPNVGTGLVGAPSCGDVMKLQIKVNDKGVIEDAKFKTFGCGSAIASSSLLTEMIKGK
TIENVTKIKNTQIVEELSLPPVKIHCSVLAEDAIKAAIHDYQNKQKH

Sequences:

>Translated_127_residues
MSYNEKILDHYENPRNVGSLDKNDPNVGTGLVGAPSCGDVMKLQIKVNDKGVIEDAKFKTFGCGSAIASSSLLTEMIKGK
TIENVTKIKNTQIVEELSLPPVKIHCSVLAEDAIKAAIHDYQNKQKH
>Mature_126_residues
SYNEKILDHYENPRNVGSLDKNDPNVGTGLVGAPSCGDVMKLQIKVNDKGVIEDAKFKTFGCGSAIASSSLLTEMIKGKT
IENVTKIKNTQIVEELSLPPVKIHCSVLAEDAIKAAIHDYQNKQKH

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=124, Percent_Identity=73.3870967741936, Blast_Score=197, Evalue=2e-51,
Organism=Homo sapiens, GI24307953, Length=121, Percent_Identity=73.5537190082645, Blast_Score=191, Evalue=2e-49,
Organism=Escherichia coli, GI1788878, Length=126, Percent_Identity=73.8095238095238, Blast_Score=209, Evalue=6e-56,
Organism=Caenorhabditis elegans, GI17543474, Length=123, Percent_Identity=74.7967479674797, Blast_Score=201, Evalue=1e-52,
Organism=Saccharomyces cerevisiae, GI6325122, Length=124, Percent_Identity=72.5806451612903, Blast_Score=196, Evalue=8e-52,
Organism=Saccharomyces cerevisiae, GI6324800, Length=124, Percent_Identity=69.3548387096774, Blast_Score=189, Evalue=1e-49,
Organism=Drosophila melanogaster, GI21355597, Length=124, Percent_Identity=72.5806451612903, Blast_Score=192, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13838; Mature: 13707

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYNEKILDHYENPRNVGSLDKNDPNVGTGLVGAPSCGDVMKLQIKVNDKGVIEDAKFKT
CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
FGCGSAIASSSLLTEMIKGKTIENVTKIKNTQIVEELSLPPVKIHCSVLAEDAIKAAIHD
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YQNKQKH
HHCCCCC
>Mature Secondary Structure 
SYNEKILDHYENPRNVGSLDKNDPNVGTGLVGAPSCGDVMKLQIKVNDKGVIEDAKFKT
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
FGCGSAIASSSLLTEMIKGKTIENVTKIKNTQIVEELSLPPVKIHCSVLAEDAIKAAIHD
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YQNKQKH
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]