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The map label for this gene is radC [C]

Identifier: 190570883

GI number: 190570883

Start: 488966

End: 489634

Strand: Reverse

Name: radC [C]

Synonym: WPa_0459

Alternate gene names: 190570883

Gene position: 489634-488966 (Counterclockwise)

Preceding gene: 190570885

Following gene: 190570882

Centisome position: 33.03

GC content: 37.52

Gene sequence:

>669_bases
ATGAATAATGGTAAAAAACTTACAGAAGAAATAGAGAGAGTATTACAGAGTGGAGGAGGAAGTGCTCTATTTGATCGGGA
GATAGTGTCAGTGCTTCTAGGAGCAGTTCATGACAGAAAGCAAGCACAAGATGTTACTAAAACTCTAATGGATAATTGCC
CAGGAATAGGAGAAATTTTAGGGCGAGAAATCGATGATCTGAAAATGATAGAAGGAATGACTGAACACGCAGCTGCAGCA
ATTGAATGTGTAAAAGAAGCTTATAAGAGAGCACTAAGAGAAGGGTTAAAAAGAGGACCTGTAATGGATAGCCAAGAAAA
GCTGATAGAGTATGTAAGGGTAAACATAGGCTTTTCAGCAAAAGAAGCTGTCCTGATAATATACTTGGATAAACAGAACC
GTTTGATAAGAGACGAAGTGTATTTTGGTACAATAGATGAAGTACACCTATCTGAAAGGAAAGTGGTAAAAAAGGCGTTA
TCAATGGAAGCAGCGTCAATAATATTATCCCATAATCATCCAGGAGGGAGTTTAGAACCATCAGAAGATGATAAGGTTAT
GACTAGAGAATTAGTGTCAGCATGTCAAGGAGTGGGAATTGAACTAGAGGATCACATTATTATGACAGACAAAGGATATT
GCAGTTTTAAGGAAAGAGAGCTGTTATAA

Upstream 100 bases:

>100_bases
TGATTTGACTTCACTCGAAAGCTATGGCTCTATGCCAATGCTGATAAAAAACAGCAGTAAACATTTAAAAACAATTTGTT
ATTAACGAGGAGTATATTTT

Downstream 100 bases:

>100_bases
ACCAAATTTCAATTGCTTGAGAAGTTTGGCTACCAACTACTACAAAACAATACAAAGAGCATAAGTAGCAAAAAAACTTA
GTCAAGAATCTGTATTGGAG

Product: Putative dna repair protein radc

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNNGKKLTEEIERVLQSGGGSALFDREIVSVLLGAVHDRKQAQDVTKTLMDNCPGIGEILGREIDDLKMIEGMTEHAAAA
IECVKEAYKRALREGLKRGPVMDSQEKLIEYVRVNIGFSAKEAVLIIYLDKQNRLIRDEVYFGTIDEVHLSERKVVKKAL
SMEAASIILSHNHPGGSLEPSEDDKVMTRELVSACQGVGIELEDHIIMTDKGYCSFKERELL

Sequences:

>Translated_222_residues
MNNGKKLTEEIERVLQSGGGSALFDREIVSVLLGAVHDRKQAQDVTKTLMDNCPGIGEILGREIDDLKMIEGMTEHAAAA
IECVKEAYKRALREGLKRGPVMDSQEKLIEYVRVNIGFSAKEAVLIIYLDKQNRLIRDEVYFGTIDEVHLSERKVVKKAL
SMEAASIILSHNHPGGSLEPSEDDKVMTRELVSACQGVGIELEDHIIMTDKGYCSFKERELL
>Mature_222_residues
MNNGKKLTEEIERVLQSGGGSALFDREIVSVLLGAVHDRKQAQDVTKTLMDNCPGIGEILGREIDDLKMIEGMTEHAAAA
IECVKEAYKRALREGLKRGPVMDSQEKLIEYVRVNIGFSAKEAVLIIYLDKQNRLIRDEVYFGTIDEVHLSERKVVKKAL
SMEAASIILSHNHPGGSLEPSEDDKVMTRELVSACQGVGIELEDHIIMTDKGYCSFKERELL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=220, Percent_Identity=27.7272727272727, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI2367100, Length=161, Percent_Identity=36.6459627329193, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788997, Length=134, Percent_Identity=38.0597014925373, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1788312, Length=141, Percent_Identity=34.7517730496454, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24743; Mature: 24743

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNGKKLTEEIERVLQSGGGSALFDREIVSVLLGAVHDRKQAQDVTKTLMDNCPGIGEIL
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
GREIDDLKMIEGMTEHAAAAIECVKEAYKRALREGLKRGPVMDSQEKLIEYVRVNIGFSA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
KEAVLIIYLDKQNRLIRDEVYFGTIDEVHLSERKVVKKALSMEAASIILSHNHPGGSLEP
CCEEEEEEECCCCCEEHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCC
SEDDKVMTRELVSACQGVGIELEDHIIMTDKGYCSFKERELL
CCCHHHHHHHHHHHHHCCCCEEECCEEEECCCCCCCHHCCCC
>Mature Secondary Structure
MNNGKKLTEEIERVLQSGGGSALFDREIVSVLLGAVHDRKQAQDVTKTLMDNCPGIGEIL
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
GREIDDLKMIEGMTEHAAAAIECVKEAYKRALREGLKRGPVMDSQEKLIEYVRVNIGFSA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
KEAVLIIYLDKQNRLIRDEVYFGTIDEVHLSERKVVKKALSMEAASIILSHNHPGGSLEP
CCEEEEEEECCCCCEEHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCC
SEDDKVMTRELVSACQGVGIELEDHIIMTDKGYCSFKERELL
CCCHHHHHHHHHHHHHCCCCEEECCEEEECCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]