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The map label for this gene is sdhC [H]

Identifier: 189184864

GI number: 189184864

Start: 1995499

End: 1995882

Strand: Reverse

Name: sdhC [H]

Synonym: OTT_1957

Alternate gene names: 189184864

Gene position: 1995882-1995499 (Counterclockwise)

Preceding gene: 189184866

Following gene: 189184863

Centisome position: 99.35

GC content: 29.43

Gene sequence:

>384_bases
TTGAATAAGTTTAATAATTCACATACTCGTCCTATGTCACCACATATTACGATTTATCGTATGCAAATGAGTATGATATT
ATCAATTTTGCACCGCTTGAGTGGAATGGCCGTTTTTGGTGGAGCTAGCATTATTACTTGGTGGTTAATTCTATGTGTAT
ATAGTGATTTTGATAGGGTTGTTGTTGATATATTTTATAACTTATGGTTTCAAGCATTAATATATCTAACTATATTTACT
ACTTGCTTTCATCTATGCACAGGTATTCGACATTTAATATGGGATACTGGATACGGTTTTTCTATTAAATACATTAATAT
TTCAGGTTGGATAGCAGTTGCTTTGTCTATAATTGTATTCTATATGTGTATTAATAATTTTTAA

Upstream 100 bases:

>100_bases
TATAGTTAAGATGAAGTATATATACTGTAATGCAGGTTGTAGTAGTAGTTAAAGTGTACCTTTTATTATTAGTAATACTA
ACAAGTTTAATGGCATAAAA

Downstream 100 bases:

>100_bases
TTTTAGTTTTCAGTGAATCAATGAATTTAAATGAAAGCACCAAATTTACAAAACAGTTTAAATACAATTAAGAGTCTAAG
TACTGATAAGTATTGTGTGC

Product: succinate dehydrogenase cytochrome b-556 subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MNKFNNSHTRPMSPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRVVVDIFYNLWFQALIYLTIFT
TCFHLCTGIRHLIWDTGYGFSIKYINISGWIAVALSIIVFYMCINNF

Sequences:

>Translated_127_residues
MNKFNNSHTRPMSPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRVVVDIFYNLWFQALIYLTIFT
TCFHLCTGIRHLIWDTGYGFSIKYINISGWIAVALSIIVFYMCINNF
>Mature_127_residues
MNKFNNSHTRPMSPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRVVVDIFYNLWFQALIYLTIFT
TCFHLCTGIRHLIWDTGYGFSIKYINISGWIAVALSIIVFYMCINNF

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323765, Length=124, Percent_Identity=30.6451612903226, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14850; Mature: 14850

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS01000 SDH_CYT_1 ; PS01001 SDH_CYT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
8.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
8.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKFNNSHTRPMSPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHH
VVDIFYNLWFQALIYLTIFTTCFHLCTGIRHLIWDTGYGFSIKYINISGWIAVALSIIVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHH
YMCINNF
HHHHHCC
>Mature Secondary Structure
MNKFNNSHTRPMSPHITIYRMQMSMILSILHRLSGMAVFGGASIITWWLILCVYSDFDRV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHH
VVDIFYNLWFQALIYLTIFTTCFHLCTGIRHLIWDTGYGFSIKYINISGWIAVALSIIVF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHH
YMCINNF
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]