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The map label for this gene is sdhD [H]

Identifier: 189184863

GI number: 189184863

Start: 1995079

End: 1995468

Strand: Reverse

Name: sdhD [H]

Synonym: OTT_1956

Alternate gene names: 189184863

Gene position: 1995468-1995079 (Counterclockwise)

Preceding gene: 189184864

Following gene: 189184862

Centisome position: 99.33

GC content: 27.44

Gene sequence:

>390_bases
ATGAAAGCACCAAATTTACAAAACAGTTTAAATACAATTAAGAGTCTAAGTACTGATAAGTATTGTGTGCAACATTGGTG
GTATCAGAGACTTAGTGCTATATTAATGTTGCCATTATTAGTATGGCTAGTATTCTTTGGTAAGGCAATAGTTCAAAAAT
CTCCAGTAGAGCTAGTAGAGCTAGTAAAGTATCCTTACAATGTATTAATGATTATTTTATTATTGATTACAATGTTTTTC
CATGCTGCAATAGGACTAAAAGTCATAATAGAAGATTATGTCAATAATCTTTCAGTAAGATATTTATTGATTGTTTTAGT
ACAATGTTTTACCTTTGTAACTGTAGTTGCAGGAATCATATCTATAATATTATTATGTATTAATTATTAA

Upstream 100 bases:

>100_bases
TAATATTTCAGGTTGGATAGCAGTTGCTTTGTCTATAATTGTATTCTATATGTGTATTAATAATTTTTAATTTTAGTTTT
CAGTGAATCAATGAATTTAA

Downstream 100 bases:

>100_bases
AATAATGTTATCTGTTTAACAAGATATGAATCTATAATAAGGTTTGATAACTATGCTGGGCATATTAGTTAGAAAAAATT
CAATTTTAAAATAATAGTAA

Product: succinate dehydrogenase hydrophobic membrane anchor protein

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MKAPNLQNSLNTIKSLSTDKYCVQHWWYQRLSAILMLPLLVWLVFFGKAIVQKSPVELVELVKYPYNVLMIILLLITMFF
HAAIGLKVIIEDYVNNLSVRYLLIVLVQCFTFVTVVAGIISIILLCINY

Sequences:

>Translated_129_residues
MKAPNLQNSLNTIKSLSTDKYCVQHWWYQRLSAILMLPLLVWLVFFGKAIVQKSPVELVELVKYPYNVLMIILLLITMFF
HAAIGLKVIIEDYVNNLSVRYLLIVLVQCFTFVTVVAGIISIILLCINY
>Mature_129_residues
MKAPNLQNSLNTIKSLSTDKYCVQHWWYQRLSAILMLPLLVWLVFFGKAIVQKSPVELVELVKYPYNVLMIILLLITMFF
HAAIGLKVIIEDYVNNLSVRYLLIVLVQCFTFVTVVAGIISIILLCINY

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 14851; Mature: 14851

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAPNLQNSLNTIKSLSTDKYCVQHWWYQRLSAILMLPLLVWLVFFGKAIVQKSPVELVE
CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LVKYPYNVLMIILLLITMFFHAAIGLKVIIEDYVNNLSVRYLLIVLVQCFTFVTVVAGII
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIILLCINY
HHHHHHHCC
>Mature Secondary Structure
MKAPNLQNSLNTIKSLSTDKYCVQHWWYQRLSAILMLPLLVWLVFFGKAIVQKSPVELVE
CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LVKYPYNVLMIILLLITMFFHAAIGLKVIIEDYVNNLSVRYLLIVLVQCFTFVTVVAGII
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIILLCINY
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA