| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is rsh [H]
Identifier: 189184837
GI number: 189184837
Start: 1964553
End: 1965128
Strand: Reverse
Name: rsh [H]
Synonym: OTT_1930
Alternate gene names: 189184837
Gene position: 1965128-1964553 (Counterclockwise)
Preceding gene: 189184838
Following gene: 189184836
Centisome position: 97.82
GC content: 30.73
Gene sequence:
>576_bases ATGATAGACTTTTATAGCGAAAGCTTACTAAATAAGCTGTTTGAAACCAACGTAAGATTTGACACTAAAATTGATCTTGA TAAAGTTGAAAAAGCAATATTTTACGCTAAAGAATATCATGGCCAGCAAAAGAGAGATACTGGAGAACTATACTACACAC ATCCATTAGAAGTAGCACGAATGGTTGGATACTACAGCTTTGAAACTGATACAATTATTACTGCAATACTACATGATACA CTCGAAGACACAACACTAACCAAAGAAAAGATTGTTAAGGTATTCGGTAGAAAAGTTGCAGAACAGGTTTCAGATCTTAC AAGGATTAAGGATAATAAAAAAATTAGTTCTAGAGAGATGATTCAAACATTATATAACCGAAATAAAACAGAACTATTAT TAATTAAGCTTTTCGACCGATTCCATAATATTCAGACTGTATCAATAAAACCTTATGAAAAAAGACAAGAAATCATACTA GAAACGCAGCAAGAATTTATACATCTTGCTGAATATCTTAAATTACAAGAAATTGCTATAGAGCTAAATAAATACTGTGA GCTTTATGCTACCTAA
Upstream 100 bases:
>100_bases GTAATGATGTAGTTTACACGCTTAGAAGCGAAATTGAGCATGAAAATTTATGTTTAAAAAAATATTGTATAATTTATTAA AGATTATTTAGAGATGAAAA
Downstream 100 bases:
>100_bases TAAACTAAAGTTTAATAGGTGGTTAATGTAGTGAATTGCAGAAATTAAAATTCAATAAGAGAATGTTCATGTAAGTTATT TTGTTGTATAATTAAAAAAG
Product: RelA/SpoT-related protein
Products: NA
Alternate protein names: (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase [H]
Number of amino acids: Translated: 191; Mature: 191
Protein sequence:
>191_residues MIDFYSESLLNKLFETNVRFDTKIDLDKVEKAIFYAKEYHGQQKRDTGELYYTHPLEVARMVGYYSFETDTIITAILHDT LEDTTLTKEKIVKVFGRKVAEQVSDLTRIKDNKKISSREMIQTLYNRNKTELLLIKLFDRFHNIQTVSIKPYEKRQEIIL ETQQEFIHLAEYLKLQEIAIELNKYCELYAT
Sequences:
>Translated_191_residues MIDFYSESLLNKLFETNVRFDTKIDLDKVEKAIFYAKEYHGQQKRDTGELYYTHPLEVARMVGYYSFETDTIITAILHDT LEDTTLTKEKIVKVFGRKVAEQVSDLTRIKDNKKISSREMIQTLYNRNKTELLLIKLFDRFHNIQTVSIKPYEKRQEIIL ETQQEFIHLAEYLKLQEIAIELNKYCELYAT >Mature_191_residues MIDFYSESLLNKLFETNVRFDTKIDLDKVEKAIFYAKEYHGQQKRDTGELYYTHPLEVARMVGYYSFETDTIITAILHDT LEDTTLTKEKIVKVFGRKVAEQVSDLTRIKDNKKISSREMIQTLYNRNKTELLLIKLFDRFHNIQTVSIKPYEKRQEIIL ETQQEFIHLAEYLKLQEIAIELNKYCELYAT
Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. Plays a role in ada
COG id: COG0317
COG function: function code TK; Guanosine polyphosphate pyrophosphohydrolases/synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
Organism=Escherichia coli, GI1790082, Length=182, Percent_Identity=32.967032967033, Blast_Score=92, Evalue=3e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR012675 - InterPro: IPR003607 - InterPro: IPR007685 - InterPro: IPR004811 - InterPro: IPR004095 - InterPro: IPR012676 [H]
Pfam domain/function: PF01842 ACT; PF04607 RelA_SpoT; PF02824 TGS [H]
EC number: =2.7.6.5 [H]
Molecular weight: Translated: 22749; Mature: 22749
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDFYSESLLNKLFETNVRFDTKIDLDKVEKAIFYAKEYHGQQKRDTGELYYTHPLEVAR CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHH MVGYYSFETDTIITAILHDTLEDTTLTKEKIVKVFGRKVAEQVSDLTRIKDNKKISSREM HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH IQTLYNRNKTELLLIKLFDRFHNIQTVSIKPYEKRQEIILETQQEFIHLAEYLKLQEIAI HHHHHCCCCHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELNKYCELYAT HHHHHHHHHCC >Mature Secondary Structure MIDFYSESLLNKLFETNVRFDTKIDLDKVEKAIFYAKEYHGQQKRDTGELYYTHPLEVAR CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHH MVGYYSFETDTIITAILHDTLEDTTLTKEKIVKVFGRKVAEQVSDLTRIKDNKKISSREM HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH IQTLYNRNKTELLLIKLFDRFHNIQTVSIKPYEKRQEIILETQQEFIHLAEYLKLQEIAI HHHHHCCCCHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELNKYCELYAT HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA