Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
---|---|
Accession | NC_010793 |
Length | 2,008,987 |
Click here to switch to the map view.
The map label for this gene is 189184836
Identifier: 189184836
GI number: 189184836
Start: 1963410
End: 1964432
Strand: Reverse
Name: 189184836
Synonym: OTT_1929
Alternate gene names: NA
Gene position: 1964432-1963410 (Counterclockwise)
Preceding gene: 189184837
Following gene: 189184834
Centisome position: 97.78
GC content: 31.67
Gene sequence:
>1023_bases ATGCATTTATCAAGATTTCTAGATCCAAAGAATGATGTAGCATTTAAAAAGATATTTGGATCAGAAAAAAACAAGGACAT ACTAATACATTTTCTGAACGATATATTGTTGTTTGAAGGGAATAGAGAAATAACAGAAGTAGAGTTTTTAGGAACGATAT TAGATGCAGACATAGCGTCTAAAAAAGAATCAATAGTAGATGTTTTGTGTAAAGATAAAAACGGTGCGCAATATATAATA GAAATGCAAGTAGATCCTACACAAGGATTTGAAAAAAGAGCCCAGTATTATGCCGCAAAAGCATATGGTAGGCAACCAAA TAGAGGAAAGGAAGGAAAATACTCAGACCTAAAGGAAGTTATATTTATAGCTATAGCAGATTATAAATTGTTTCCAAATA AAGAAGACTATATATCAAGGCATGTAATACTGGATAAAAAGACATATGAGCATGATCTAAAGGACTTTTCATTTACCTTT ATAGAATTACCAAAATTTAAAAAAGATAGAGTGGAAGAGTTGAATAATATAACAGAGAAGTGGTGCTATTTTTTTAAACA TGCAAAAGAAACAACATTAGATGGATATAATAAAATAATAGGTGAAGATTTAATAATAAAGAGAGCGTATGAGGCATTAG ATCAGTTTAATTGGAGTGAAGACGAACTAATAACCTATGAACAAGAGTTAAAGCGTATATGGGATAATAAAGCAGTCGAA GATTATAAACTCGAACGCGCTAAAGCTGAAGGTAAAGCTGAAGGCATAAAGCTCGGTGAAGCTAAAGGTAAAGCTGAAGG TAAAGCTGAAGGTAAAGCTGAAGGTAAAGCTGAAGGTAAAGCTGAAGGTAAAGCCGAAGGTAAAGCTGAAGGCATAAAGC TCGGCGAAGCTAAAGGTAAAGCTGAAGCAAAAAAAGATTTGGCAATAAAATTATTGAAATCTGAATTATCAGTTGAGACA ATTGCTGAATATACTGATTTATCAATACAAGAAGTGTTAAATTTAAAAAATAGTGTAAAATAA
Upstream 100 bases:
>100_bases GGTTAATGTAGTGAATTGCAGAAATTAAAATTCAATAAGAGAATGTTCATGTAAGTTATTTTGTTGTATAATTAAAAAAG GTAGAAAAAATGAAAAACAT
Downstream 100 bases:
>100_bases TAATGAATATACAACACAAAATCTTACTTTTGATGTGTTGTATGCTACTTCTATTAGATGCTTTATATCACACTACAAGT TCTATACTATACTGAACATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 340; Mature: 340
Protein sequence:
>340_residues MHLSRFLDPKNDVAFKKIFGSEKNKDILIHFLNDILLFEGNREITEVEFLGTILDADIASKKESIVDVLCKDKNGAQYII EMQVDPTQGFEKRAQYYAAKAYGRQPNRGKEGKYSDLKEVIFIAIADYKLFPNKEDYISRHVILDKKTYEHDLKDFSFTF IELPKFKKDRVEELNNITEKWCYFFKHAKETTLDGYNKIIGEDLIIKRAYEALDQFNWSEDELITYEQELKRIWDNKAVE DYKLERAKAEGKAEGIKLGEAKGKAEGKAEGKAEGKAEGKAEGKAEGKAEGIKLGEAKGKAEAKKDLAIKLLKSELSVET IAEYTDLSIQEVLNLKNSVK
Sequences:
>Translated_340_residues MHLSRFLDPKNDVAFKKIFGSEKNKDILIHFLNDILLFEGNREITEVEFLGTILDADIASKKESIVDVLCKDKNGAQYII EMQVDPTQGFEKRAQYYAAKAYGRQPNRGKEGKYSDLKEVIFIAIADYKLFPNKEDYISRHVILDKKTYEHDLKDFSFTF IELPKFKKDRVEELNNITEKWCYFFKHAKETTLDGYNKIIGEDLIIKRAYEALDQFNWSEDELITYEQELKRIWDNKAVE DYKLERAKAEGKAEGIKLGEAKGKAEGKAEGKAEGKAEGKAEGKAEGKAEGIKLGEAKGKAEAKKDLAIKLLKSELSVET IAEYTDLSIQEVLNLKNSVK >Mature_340_residues MHLSRFLDPKNDVAFKKIFGSEKNKDILIHFLNDILLFEGNREITEVEFLGTILDADIASKKESIVDVLCKDKNGAQYII EMQVDPTQGFEKRAQYYAAKAYGRQPNRGKEGKYSDLKEVIFIAIADYKLFPNKEDYISRHVILDKKTYEHDLKDFSFTF IELPKFKKDRVEELNNITEKWCYFFKHAKETTLDGYNKIIGEDLIIKRAYEALDQFNWSEDELITYEQELKRIWDNKAVE DYKLERAKAEGKAEGIKLGEAKGKAEGKAEGKAEGKAEGKAEGKAEGKAEGIKLGEAKGKAEAKKDLAIKLLKSELSVET IAEYTDLSIQEVLNLKNSVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38860; Mature: 38860
Theoretical pI: Translated: 5.87; Mature: 5.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLSRFLDPKNDVAFKKIFGSEKNKDILIHFLNDILLFEGNREITEVEFLGTILDADIAS CCCHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHH KKESIVDVLCKDKNGAQYIIEMQVDPTQGFEKRAQYYAAKAYGRQPNRGKEGKYSDLKEV HHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH IFIAIADYKLFPNKEDYISRHVILDKKTYEHDLKDFSFTFIELPKFKKDRVEELNNITEK HHHEEECCEECCCCHHHHHHHEEECCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH WCYFFKHAKETTLDGYNKIIGEDLIIKRAYEALDQFNWSEDELITYEQELKRIWDNKAVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH DYKLERAKAEGKAEGIKLGEAKGKAEGKAEGKAEGKAEGKAEGKAEGKAEGIKLGEAKGK HHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC AEAKKDLAIKLLKSELSVETIAEYTDLSIQEVLNLKNSVK HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC >Mature Secondary Structure MHLSRFLDPKNDVAFKKIFGSEKNKDILIHFLNDILLFEGNREITEVEFLGTILDADIAS CCCHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHH KKESIVDVLCKDKNGAQYIIEMQVDPTQGFEKRAQYYAAKAYGRQPNRGKEGKYSDLKEV HHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHH IFIAIADYKLFPNKEDYISRHVILDKKTYEHDLKDFSFTFIELPKFKKDRVEELNNITEK HHHEEECCEECCCCHHHHHHHEEECCHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH WCYFFKHAKETTLDGYNKIIGEDLIIKRAYEALDQFNWSEDELITYEQELKRIWDNKAVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHH DYKLERAKAEGKAEGIKLGEAKGKAEGKAEGKAEGKAEGKAEGKAEGKAEGIKLGEAKGK HHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC AEAKKDLAIKLLKSELSVETIAEYTDLSIQEVLNLKNSVK HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA