| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is xseA [H]
Identifier: 189184650
GI number: 189184650
Start: 1766849
End: 1768219
Strand: Reverse
Name: xseA [H]
Synonym: OTT_1743
Alternate gene names: 189184650
Gene position: 1768219-1766849 (Counterclockwise)
Preceding gene: 189184651
Following gene: 189184649
Centisome position: 88.02
GC content: 32.53
Gene sequence:
>1371_bases ATGCATGCAAAAAATATAAGTGGTTTTGATGTTAACTATCTAAGTGACGAATGCAATGCCAAGGAATATACAGTTCATGA GCTTTCGTTGCACATAAAATCAGCTATTGAATATCAGTTCGGCGTGCTAAAAGTACGAGGTGAAGTTTCTGGATTAAAAA TTGCTAGTTCATGTCATAGCTATTTTAACTTAAAAGACGATAAAGCAGTTTTAAATTGTGTATGTTGGAAAACAACTTTA AATCTTGTAAAAATTAAGGTTGAAGATGGAATAGAGGTTATAGCTACTGGTAGGCTCACTACTTATTCAGGCCAATCTAG ATATCAGCTTGTAGTTGAAAATATTTGTATTGCTGGGTTAGGATCATTGATGCAAATATTTTTTCAACGTAAAGAAAAAT TAATGAAAGAAGGGCTGTTTGATAATTCTAGAAAAAAAAAGCTACCAGCCTTTCCAATGGTTATTGGAGTCATAACATCT ATTTCTGGCGCTGTTATCAGAGATATTGCGCATCGAGTTAATGACCGCTTTCCTAGCAAATTATTAGTATGGCCAGTAAC GGTACAAGGCAATAATTCTGCTAATGAGGTAGCAAGTGCTATTCAAGAATGTAACAATATGCTAACTAGTAACAATGATC TAGCTCCCGAAGTTATTATTATAGCTAGAGGTGGTGGATCTGTGGAAGATTTATGGTCATTTAATGAAGAAATTGTTGTT AGGGCTATAGCTAGCTCAGTTATTCCAATAGTATCAGCTATTGGCCACGAAGTAGATTTTACTCTTGCAGATTTTGCTGC TGACCTAAGAGCTCCAACGCCATCAGCTGCTGCTGAGATGGTAGTGCCAGTTTTAGCTGATATAAAAATGCGTTTAAATA ATTCAATGAACCAGATAAATCATGTTACTTTCAATTATTTAAAATGTAGTGTTATGTCGCTGAATAATTGTGGTAATATT GTTCAAAAGCTAAAAACAATGATAGATTTAAATTATCAAAAATTTGATGAGCTTGTATTTCGATTTGATACAAAAGTAGA GCAATTTGGAGAACTTCAAAAAAGAATTTTACAAAATAATGTGCTTATTGATCCTAGTAAATTGGTGCAATTATACGCAC TGAAACTTGAAAACCTTAATAATAAGTTATATCAACTTGTAAAAAGATTATTTGTTAACTTAGATAACAAAGTGTATTTG TTAGATTCTCTCTTAAATAATATGGATTATTCAAGAGTACTTAAAAGAGGATTTGCCATTATAAGATTAGTAGACGGACC AGTGGTATCTTCATTGTCTCAGCTTAAAGGTAATGACAAAATAAAGATACAATTACAAGACGGAGTACGACAAGCTACAA TTGATTCTTAA
Upstream 100 bases:
>100_bases GTCATTGTGTTGCTAAATTAAGTTAGCGTATTTTTTATCATAAAATAAAAAATTTTAGTATAAAATGAAATTATTGATTA TATAAAAAAAATGAATTTTT
Downstream 100 bases:
>100_bases TTGATATTAGCTGCATTTTTTACTGTTTAAAATTTTATGTGATTATTAAGCTTATATTATGTCGCATTATAAAAGTACAT TATTTATATTATTATTGCTT
Product: exodeoxyribonuclease VII large subunit
Products: NA
Alternate protein names: Exodeoxyribonuclease VII large subunit; Exonuclease VII large subunit [H]
Number of amino acids: Translated: 456; Mature: 456
Protein sequence:
>456_residues MHAKNISGFDVNYLSDECNAKEYTVHELSLHIKSAIEYQFGVLKVRGEVSGLKIASSCHSYFNLKDDKAVLNCVCWKTTL NLVKIKVEDGIEVIATGRLTTYSGQSRYQLVVENICIAGLGSLMQIFFQRKEKLMKEGLFDNSRKKKLPAFPMVIGVITS ISGAVIRDIAHRVNDRFPSKLLVWPVTVQGNNSANEVASAIQECNNMLTSNNDLAPEVIIIARGGGSVEDLWSFNEEIVV RAIASSVIPIVSAIGHEVDFTLADFAADLRAPTPSAAAEMVVPVLADIKMRLNNSMNQINHVTFNYLKCSVMSLNNCGNI VQKLKTMIDLNYQKFDELVFRFDTKVEQFGELQKRILQNNVLIDPSKLVQLYALKLENLNNKLYQLVKRLFVNLDNKVYL LDSLLNNMDYSRVLKRGFAIIRLVDGPVVSSLSQLKGNDKIKIQLQDGVRQATIDS
Sequences:
>Translated_456_residues MHAKNISGFDVNYLSDECNAKEYTVHELSLHIKSAIEYQFGVLKVRGEVSGLKIASSCHSYFNLKDDKAVLNCVCWKTTL NLVKIKVEDGIEVIATGRLTTYSGQSRYQLVVENICIAGLGSLMQIFFQRKEKLMKEGLFDNSRKKKLPAFPMVIGVITS ISGAVIRDIAHRVNDRFPSKLLVWPVTVQGNNSANEVASAIQECNNMLTSNNDLAPEVIIIARGGGSVEDLWSFNEEIVV RAIASSVIPIVSAIGHEVDFTLADFAADLRAPTPSAAAEMVVPVLADIKMRLNNSMNQINHVTFNYLKCSVMSLNNCGNI VQKLKTMIDLNYQKFDELVFRFDTKVEQFGELQKRILQNNVLIDPSKLVQLYALKLENLNNKLYQLVKRLFVNLDNKVYL LDSLLNNMDYSRVLKRGFAIIRLVDGPVVSSLSQLKGNDKIKIQLQDGVRQATIDS >Mature_456_residues MHAKNISGFDVNYLSDECNAKEYTVHELSLHIKSAIEYQFGVLKVRGEVSGLKIASSCHSYFNLKDDKAVLNCVCWKTTL NLVKIKVEDGIEVIATGRLTTYSGQSRYQLVVENICIAGLGSLMQIFFQRKEKLMKEGLFDNSRKKKLPAFPMVIGVITS ISGAVIRDIAHRVNDRFPSKLLVWPVTVQGNNSANEVASAIQECNNMLTSNNDLAPEVIIIARGGGSVEDLWSFNEEIVV RAIASSVIPIVSAIGHEVDFTLADFAADLRAPTPSAAAEMVVPVLADIKMRLNNSMNQINHVTFNYLKCSVMSLNNCGNI VQKLKTMIDLNYQKFDELVFRFDTKVEQFGELQKRILQNNVLIDPSKLVQLYALKLENLNNKLYQLVKRLFVNLDNKVYL LDSLLNNMDYSRVLKRGFAIIRLVDGPVVSSLSQLKGNDKIKIQLQDGVRQATIDS
Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]
COG id: COG1570
COG function: function code L; Exonuclease VII, large subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xseA family [H]
Homologues:
Organism=Escherichia coli, GI1788856, Length=433, Percent_Identity=31.8706697459584, Blast_Score=234, Evalue=9e-63,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003753 - InterPro: IPR020579 - InterPro: IPR004365 [H]
Pfam domain/function: PF02601 Exonuc_VII_L; PF01336 tRNA_anti [H]
EC number: =3.1.11.6 [H]
Molecular weight: Translated: 50982; Mature: 50982
Theoretical pI: Translated: 8.53; Mature: 8.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHAKNISGFDVNYLSDECNAKEYTVHELSLHIKSAIEYQFGVLKVRGEVSGLKIASSCHS CCCCCCCCCCCEECCCCCCCCCEEHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHH YFNLKDDKAVLNCVCWKTTLNLVKIKVEDGIEVIATGRLTTYSGQSRYQLVVENICIAGL HCCCCCCHHHHHHHHHHEEEEEEEEEEECCEEEEEECCEEEECCCCHHHHHHHHHHHHHH GSLMQIFFQRKEKLMKEGLFDNSRKKKLPAFPMVIGVITSISGAVIRDIAHRVNDRFPSK HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC LLVWPVTVQGNNSANEVASAIQECNNMLTSNNDLAPEVIIIARGGGSVEDLWSFNEEIVV EEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHCCCHHHHH RAIASSVIPIVSAIGHEVDFTLADFAADLRAPTPSAAAEMVVPVLADIKMRLNNSMNQIN HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH HVTFNYLKCSVMSLNNCGNIVQKLKTMIDLNYQKFDELVFRFDTKVEQFGELQKRILQNN HHEEHHHEEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VLIDPSKLVQLYALKLENLNNKLYQLVKRLFVNLDNKVYLLDSLLNNMDYSRVLKRGFAI CEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEHHHHHCCCCHHHHHHCCCEE IRLVDGPVVSSLSQLKGNDKIKIQLQDGVRQATIDS EEEECCHHHHHHHHHCCCCEEEEEECCCCCHHCCCC >Mature Secondary Structure MHAKNISGFDVNYLSDECNAKEYTVHELSLHIKSAIEYQFGVLKVRGEVSGLKIASSCHS CCCCCCCCCCCEECCCCCCCCCEEHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHH YFNLKDDKAVLNCVCWKTTLNLVKIKVEDGIEVIATGRLTTYSGQSRYQLVVENICIAGL HCCCCCCHHHHHHHHHHEEEEEEEEEEECCEEEEEECCEEEECCCCHHHHHHHHHHHHHH GSLMQIFFQRKEKLMKEGLFDNSRKKKLPAFPMVIGVITSISGAVIRDIAHRVNDRFPSK HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC LLVWPVTVQGNNSANEVASAIQECNNMLTSNNDLAPEVIIIARGGGSVEDLWSFNEEIVV EEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHCCCHHHHH RAIASSVIPIVSAIGHEVDFTLADFAADLRAPTPSAAAEMVVPVLADIKMRLNNSMNQIN HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH HVTFNYLKCSVMSLNNCGNIVQKLKTMIDLNYQKFDELVFRFDTKVEQFGELQKRILQNN HHEEHHHEEEEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC VLIDPSKLVQLYALKLENLNNKLYQLVKRLFVNLDNKVYLLDSLLNNMDYSRVLKRGFAI CEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEHHHHHCCCCHHHHHHCCCEE IRLVDGPVVSSLSQLKGNDKIKIQLQDGVRQATIDS EEEECCHHHHHHHHHCCCCEEEEEECCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA