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The map label for this gene is rnhB [H]

Identifier: 189184531

GI number: 189184531

Start: 1651363

End: 1651980

Strand: Reverse

Name: rnhB [H]

Synonym: OTT_1624

Alternate gene names: 189184531

Gene position: 1651980-1651363 (Counterclockwise)

Preceding gene: 189184535

Following gene: 189184530

Centisome position: 82.23

GC content: 33.17

Gene sequence:

>618_bases
ATGAATCCTAACTTAAATATTGAACAAGATAATGCTTCGGAAATAATTGCTGGTGTAGATGAAGCTGGCAGAGGTCCATT
AGCTGGACCAGTAGTAGCTGCTGCTGTAGTTGTTAACCAATCAATCATGATAGATGATATTAAAGATTCAAAAGTGTTAT
CTAAATCTAAAAGAGAAAGTTGCTATGATAAGATTACTAATAACTACTACTACAGTATTGGTATAGCATCAGTTCAAGAG
ATTGATAAATATAATATTTTAGAAGCAACAAAGCTTGCATGTATAAGAGCTGTTAAGAATTTAGCAATCATACCCACAAA
AGTGCTAGTAGATGGCAATATGAATTTTACTGACAATAGATTTATTAGTATAGTTCGTGGTGATCAGATTTGCTACTCTA
TAGCATCTGCTTCAATAGTAGCAAAGGTAACAAGAGATCGCATGATGCAGATTTTACACCAAGAGTATCCAGTTTATGGT
TGGAATCAGAATTGTGGGTATGGAACTAAACTGCATATTGAGGCAATTAAAACTTATGGTCAAACTATACATCACAGAGT
TAGCTTTAAATTTAAAGGCAATATCAACCATAGTGCGATATTAGGGAATATGGTATAA

Upstream 100 bases:

>100_bases
TAGGCCCAGCAATTATAAATATATCATTCATTGTTAATATAGTTTCAATAATAAGTGCACATTATAATATAATGTATACT
AAATCAATAACTTCTATAGT

Downstream 100 bases:

>100_bases
TATAGCCAAACCACTATAAAACAGTTATGTTATATTAAAAAAATGGTTTCAAGCTAAATCAAGAAGAATAAAATATCACT
GTGAGTAAACACACTTTTCG

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MNPNLNIEQDNASEIIAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRESCYDKITNNYYYSIGIASVQE
IDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTDNRFISIVRGDQICYSIASASIVAKVTRDRMMQILHQEYPVYG
WNQNCGYGTKLHIEAIKTYGQTIHHRVSFKFKGNINHSAILGNMV

Sequences:

>Translated_205_residues
MNPNLNIEQDNASEIIAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRESCYDKITNNYYYSIGIASVQE
IDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTDNRFISIVRGDQICYSIASASIVAKVTRDRMMQILHQEYPVYG
WNQNCGYGTKLHIEAIKTYGQTIHHRVSFKFKGNINHSAILGNMV
>Mature_205_residues
MNPNLNIEQDNASEIIAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRESCYDKITNNYYYSIGIASVQE
IDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTDNRFISIVRGDQICYSIASASIVAKVTRDRMMQILHQEYPVYG
WNQNCGYGTKLHIEAIKTYGQTIHHRVSFKFKGNINHSAILGNMV

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=179, Percent_Identity=44.6927374301676, Blast_Score=146, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 22727; Mature: 22727

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPNLNIEQDNASEIIAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRES
CCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
CYDKITNNYYYSIGIASVQEIDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTDNR
HHHHHHCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCEECCEEEEEECCCCCCCCE
FISIVRGDQICYSIASASIVAKVTRDRMMQILHQEYPVYGWNQNCGYGTKLHIEAIKTYG
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHH
QTIHHRVSFKFKGNINHSAILGNMV
HHHHHEEEEEEECCCCCCEECCCCC
>Mature Secondary Structure
MNPNLNIEQDNASEIIAGVDEAGRGPLAGPVVAAAVVVNQSIMIDDIKDSKVLSKSKRES
CCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHH
CYDKITNNYYYSIGIASVQEIDKYNILEATKLACIRAVKNLAIIPTKVLVDGNMNFTDNR
HHHHHHCCEEEEEECHHHHHHCCCCHHHHHHHHHHHHHHHCEECCEEEEEECCCCCCCCE
FISIVRGDQICYSIASASIVAKVTRDRMMQILHQEYPVYGWNQNCGYGTKLHIEAIKTYG
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHH
QTIHHRVSFKFKGNINHSAILGNMV
HHHHHEEEEEEECCCCCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA