Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
---|---|
Accession | NC_010793 |
Length | 2,008,987 |
Click here to switch to the map view.
The map label for this gene is 189184483
Identifier: 189184483
GI number: 189184483
Start: 1606140
End: 1606562
Strand: Reverse
Name: 189184483
Synonym: OTT_1576
Alternate gene names: NA
Gene position: 1606562-1606140 (Counterclockwise)
Preceding gene: 189184485
Following gene: 189184480
Centisome position: 79.97
GC content: 24.35
Gene sequence:
>423_bases ATGACCTACATATCTGAAATATATCTACTATTAGCAAGTAATATTTTTGCCTCTAATTTTATTTTTAGCATTGAATCAGA ATATGTTTTTAGTGCCATGAGACATTTTGGCAACTATCAATTACATTTAGTAGTAATATCTATTATAGCTTCATTGTTTT GTGTTGGTAGCATAAATTATTTTTTAGGCGAACTATGCTATAAAATATATCTTTACTATCAAAATCCTAATCTAATTGCA AGATATAATAAATTATTTACAAGATTTAATGAGCATTGGAAACTAATATTATTATTAACTCTTGTTCCAATAATAGGAAA CACAATAATTTTTGTAGCTGGTTTTCTACATAACTCTTATGCTAAAAATATTAGCGCATTTATAACAATAAAAACACTCT ATTATTTGTTACCAATATTTTAG
Upstream 100 bases:
>100_bases AAAACTAGAAATATTTTTATAATCGAAAGTAAGAATAATTATTTTATCATTTTAATATATAAGTGTATAATGATTTAAAA ATATATCTGCATCGTTATCA
Downstream 100 bases:
>100_bases TTATCTAACCTAGGGTCAATATAAGTGATAGATAAAATAATGATAAAAAAAATAATCGTAGGTTAGCAGGAGAAAGAGTT ATGAATAAAAACATTATTGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 140; Mature: 139
Protein sequence:
>140_residues MTYISEIYLLLASNIFASNFIFSIESEYVFSAMRHFGNYQLHLVVISIIASLFCVGSINYFLGELCYKIYLYYQNPNLIA RYNKLFTRFNEHWKLILLLTLVPIIGNTIIFVAGFLHNSYAKNISAFITIKTLYYLLPIF
Sequences:
>Translated_140_residues MTYISEIYLLLASNIFASNFIFSIESEYVFSAMRHFGNYQLHLVVISIIASLFCVGSINYFLGELCYKIYLYYQNPNLIA RYNKLFTRFNEHWKLILLLTLVPIIGNTIIFVAGFLHNSYAKNISAFITIKTLYYLLPIF >Mature_139_residues TYISEIYLLLASNIFASNFIFSIESEYVFSAMRHFGNYQLHLVVISIIASLFCVGSINYFLGELCYKIYLYYQNPNLIAR YNKLFTRFNEHWKLILLLTLVPIIGNTIIFVAGFLHNSYAKNISAFITIKTLYYLLPIF
Specific function: Unknown
COG id: COG1238
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16354; Mature: 16222
Theoretical pI: Translated: 8.93; Mature: 8.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYISEIYLLLASNIFASNFIFSIESEYVFSAMRHFGNYQLHLVVISIIASLFCVGSINY CCHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH FLGELCYKIYLYYQNPNLIARYNKLFTRFNEHWKLILLLTLVPIIGNTIIFVAGFLHNSY HHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH AKNISAFITIKTLYYLLPIF HHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TYISEIYLLLASNIFASNFIFSIESEYVFSAMRHFGNYQLHLVVISIIASLFCVGSINY CHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH FLGELCYKIYLYYQNPNLIARYNKLFTRFNEHWKLILLLTLVPIIGNTIIFVAGFLHNSY HHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH AKNISAFITIKTLYYLLPIF HHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA