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The map label for this gene is 188586578

Identifier: 188586578

GI number: 188586578

Start: 2071676

End: 2072359

Strand: Reverse

Name: 188586578

Synonym: Nther_1965

Alternate gene names: NA

Gene position: 2072359-2071676 (Counterclockwise)

Preceding gene: 188586579

Following gene: 188586575

Centisome position: 65.47

GC content: 32.16

Gene sequence:

>684_bases
GTGGTATCCGAAACTATAACAGCTGTTAAAAATGATGAAAAAGAACTTAAATTAATAAAAAGGGGTCAACATTATGAGAT
TATCTCTAATGGCATTTTTTTAATGGCTACTTATGGAGGAAACAGTGAGCGGGAAATGGTTGAAGATGGTTTATTTTATG
TGAGTCAATTTAAGTTGAAGGATATAAAAGTCTTAATTGCAGGACTTGGTGTGGGTTATTCATTAATTCCGGCGGTAAAA
GACGACAGGGTTTCCAAGTTAGATGTAGTTGAGATGGAACAAGAGATCATAGATTGGAATAAAAAATACTTCTCAAAATA
TAATGAAAATTGCTTGGAAAATGAAAAGGTAACAGTGATCCAGGATGATATTTATAACTATCTTAAAAATAACGCAGAGT
TGGGCCATGATTACTACGATTTGATCATTTTGGATGTTGACAATGGTCCGGACTGGCTTGTAAGAGAAGATAATAAACGA
TTATATCAAAAACAGGGAATGGAATTAGTAAGTAAGTCATTAAATCAAGGTGGTTATGTTGCAATTTGGTCAATGGAAGA
AAAAAGTAGCTTAGAAAATTCTTTATTGGCATGTTACTCGCAAGTTTTTATCAGAGAATATTTGTCCTATGATGATAAAG
GTAGGAAACATAAAGATTCTGTTTATTTTGCTCAAAAAAACTAA

Upstream 100 bases:

>100_bases
TAGTTTTCAAAAAATTTTGTTGTTTAGTCATTGACAGCTCTAATATTCTCTGATAATTTATCCTTGCCAATATCGTATTG
CCGGGAAAGGAGGAGAAAAC

Downstream 100 bases:

>100_bases
AATTCTATTAAATAAGTATAGCCGGGTCAGTTCCCGGCTATACTTTATTGTTACTACATGTATTAGCTTCTTCGAGTGAA
ATATTGTTGTTGTTGGCCCT

Product: Spermine synthase

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MVSETITAVKNDEKELKLIKRGQHYEIISNGIFLMATYGGNSEREMVEDGLFYVSQFKLKDIKVLIAGLGVGYSLIPAVK
DDRVSKLDVVEMEQEIIDWNKKYFSKYNENCLENEKVTVIQDDIYNYLKNNAELGHDYYDLIILDVDNGPDWLVREDNKR
LYQKQGMELVSKSLNQGGYVAIWSMEEKSSLENSLLACYSQVFIREYLSYDDKGRKHKDSVYFAQKN

Sequences:

>Translated_227_residues
MVSETITAVKNDEKELKLIKRGQHYEIISNGIFLMATYGGNSEREMVEDGLFYVSQFKLKDIKVLIAGLGVGYSLIPAVK
DDRVSKLDVVEMEQEIIDWNKKYFSKYNENCLENEKVTVIQDDIYNYLKNNAELGHDYYDLIILDVDNGPDWLVREDNKR
LYQKQGMELVSKSLNQGGYVAIWSMEEKSSLENSLLACYSQVFIREYLSYDDKGRKHKDSVYFAQKN
>Mature_227_residues
MVSETITAVKNDEKELKLIKRGQHYEIISNGIFLMATYGGNSEREMVEDGLFYVSQFKLKDIKVLIAGLGVGYSLIPAVK
DDRVSKLDVVEMEQEIIDWNKKYFSKYNENCLENEKVTVIQDDIYNYLKNNAELGHDYYDLIILDVDNGPDWLVREDNKR
LYQKQGMELVSKSLNQGGYVAIWSMEEKSSLENSLLACYSQVFIREYLSYDDKGRKHKDSVYFAQKN

Specific function: Unknown

COG id: COG0421

COG function: function code E; Spermidine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26351; Mature: 26351

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS51006 SPERMIDINE_SYNTHASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSETITAVKNDEKELKLIKRGQHYEIISNGIFLMATYGGNSEREMVEDGLFYVSQFKLK
CCCCHHHHHCCCHHHHHHHHCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH
DIKVLIAGLGVGYSLIPAVKDDRVSKLDVVEMEQEIIDWNKKYFSKYNENCLENEKVTVI
HHHHHEEHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCEEEE
QDDIYNYLKNNAELGHDYYDLIILDVDNGPDWLVREDNKRLYQKQGMELVSKSLNQGGYV
HHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCEE
AIWSMEEKSSLENSLLACYSQVFIREYLSYDDKGRKHKDSVYFAQKN
EEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MVSETITAVKNDEKELKLIKRGQHYEIISNGIFLMATYGGNSEREMVEDGLFYVSQFKLK
CCCCHHHHHCCCHHHHHHHHCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHHHHH
DIKVLIAGLGVGYSLIPAVKDDRVSKLDVVEMEQEIIDWNKKYFSKYNENCLENEKVTVI
HHHHHEEHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCEEEE
QDDIYNYLKNNAELGHDYYDLIILDVDNGPDWLVREDNKRLYQKQGMELVSKSLNQGGYV
HHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHCCCCCEE
AIWSMEEKSSLENSLLACYSQVFIREYLSYDDKGRKHKDSVYFAQKN
EEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA