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The map label for this gene is 188586575

Identifier: 188586575

GI number: 188586575

Start: 2070390

End: 2070950

Strand: Reverse

Name: 188586575

Synonym: Nther_1962

Alternate gene names: NA

Gene position: 2070950-2070390 (Counterclockwise)

Preceding gene: 188586578

Following gene: 188586574

Centisome position: 65.42

GC content: 32.98

Gene sequence:

>561_bases
ATGCGTAGTTTTATAGCAATTTTTTTTAATTCAAAAGTGGTAGAAAGCCTTGCTAGAAATCAAAACTTATGTAGAGAAAA
AGGGATTAAAGGTAAATACGTAAAACCTGATAATATACATTTGACAGTCAAATTTTTAGGTGATGTTGAACAAAATGCTT
TGGATAAATTACAACTTTTAGATCAAGAACTAGAACAAATAGAGCCTTTAAAGTTGCGTTTATCCCATTTGGGTGTATTT
CCCGGTAAAGGGCGACCACGAGTATTGTGGCAGGGATTATCAGGGGATGACATAAAGGATCTTCAACAAATTCATCAGGA
GGTGGAACAATTTACTGAAAGAGAATTAAAGATAGCTCAAGAAAAAAAGAAATTTCGGCCTCATGTCACTTTGTTAAGAA
ATCCAGATATTCCAAAAGGTGTTTCCATTGATCAAATTTCTAAAGAAGAATTAGAGCGGCCAGAAATTCTTGTAGATTCT
ATTTCATTGATTAAAAGCGAATTAACACCAAAAGGGCCTATATATACAGAACTAAAACGTTTTGTGTTCAATAACTCTTA
G

Upstream 100 bases:

>100_bases
CTGAGTTAATTGTTGTTGATTATGATACATGGCACCACCTCCTTACCAATTTTTGTTCTTTATGTGACCAAGAATAGTAT
TTATCGTGAGAGGTGAAATT

Downstream 100 bases:

>100_bases
TAAAGGAGATGATGTTTTGTTTGAGTTATTGGAAGAATTAGAGCCTAAGTTTAAGAAACATTTCAATAAAGAAGTTAATA
TGACTGAAATAACCAGGTAT

Product: 2'-5' RNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MRSFIAIFFNSKVVESLARNQNLCREKGIKGKYVKPDNIHLTVKFLGDVEQNALDKLQLLDQELEQIEPLKLRLSHLGVF
PGKGRPRVLWQGLSGDDIKDLQQIHQEVEQFTERELKIAQEKKKFRPHVTLLRNPDIPKGVSIDQISKEELERPEILVDS
ISLIKSELTPKGPIYTELKRFVFNNS

Sequences:

>Translated_186_residues
MRSFIAIFFNSKVVESLARNQNLCREKGIKGKYVKPDNIHLTVKFLGDVEQNALDKLQLLDQELEQIEPLKLRLSHLGVF
PGKGRPRVLWQGLSGDDIKDLQQIHQEVEQFTERELKIAQEKKKFRPHVTLLRNPDIPKGVSIDQISKEELERPEILVDS
ISLIKSELTPKGPIYTELKRFVFNNS
>Mature_186_residues
MRSFIAIFFNSKVVESLARNQNLCREKGIKGKYVKPDNIHLTVKFLGDVEQNALDKLQLLDQELEQIEPLKLRLSHLGVF
PGKGRPRVLWQGLSGDDIKDLQQIHQEVEQFTERELKIAQEKKKFRPHVTLLRNPDIPKGVSIDQISKEELERPEILVDS
ISLIKSELTPKGPIYTELKRFVFNNS

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 21480; Mature: 21480

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSFIAIFFNSKVVESLARNQNLCREKGIKGKYVKPDNIHLTVKFLGDVEQNALDKLQLL
CCCEEEEHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHH
DQELEQIEPLKLRLSHLGVFPGKGRPRVLWQGLSGDDIKDLQQIHQEVEQFTERELKIAQ
HHHHHHHCHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EKKKFRPHVTLLRNPDIPKGVSIDQISKEELERPEILVDSISLIKSELTPKGPIYTELKR
HHHHCCCCEEEEECCCCCCCCCHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
FVFNNS
HHHCCC
>Mature Secondary Structure
MRSFIAIFFNSKVVESLARNQNLCREKGIKGKYVKPDNIHLTVKFLGDVEQNALDKLQLL
CCCEEEEHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHH
DQELEQIEPLKLRLSHLGVFPGKGRPRVLWQGLSGDDIKDLQQIHQEVEQFTERELKIAQ
HHHHHHHCHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EKKKFRPHVTLLRNPDIPKGVSIDQISKEELERPEILVDSISLIKSELTPKGPIYTELKR
HHHHCCCCEEEEECCCCCCCCCHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
FVFNNS
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]