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The map label for this gene is yqxC [H]

Identifier: 188586310

GI number: 188586310

Start: 1768878

End: 1769708

Strand: Reverse

Name: yqxC [H]

Synonym: Nther_1693

Alternate gene names: 188586310

Gene position: 1769708-1768878 (Counterclockwise)

Preceding gene: 188586311

Following gene: 188586309

Centisome position: 55.91

GC content: 35.26

Gene sequence:

>831_bases
TTGAGCAAGGATAAAAATCGACTCGACCAATTGCTAGTAGATAAAGGTTATTTCGCATCAAGGGAGCAGGCCAAGCGCAA
TATTATGGCTGGTTTAGTTTTTGTCGATAATCAAAAAATTGACAAGCCTGGAAAAAAAGTTCATCTTGATGTGCCACTTT
ATGTAAAAAATGACCACTTAAAATATGTAAGTCGAGGTGGATATAAACTAGAGAAAGCTTTAGATGAGTTTTCCGTAAAT
GTTGAGGATAGAATTGCAGTTGATATCGGTGCATCAACAGGTGGCTTTACGGATTGTTTATTAGCTAATGGAGCCGCACA
TGTATATGCAGTTGATGTGGGATACGGTCAATTAGCTTGGAGGTTGAGAAATAGCCAGCAAGTGACAGTACATGAAAAAA
CTAATATACGTCATGTGAATTCTGACTTGTTTGATGACATACCTGATCTAGCGACTATTGATGTTTCCTTTATCTCTTTA
AGATTGGTAATACCCATAGTAAATGAGATACTAGCACATCCTAAGGATATCCTGGTATTAATAAAACCACAATTTGAAGC
TGATAAAGATCAAGTTGGGAAAAAAGGTGTTATAAAAGATAAGGACATTCAGATAGAAGTTTTGCATAAAGTTTTAGATA
TGGCAAAAACAGATTTGAATTTTAATGTTTGTGGATTGACATTTTCCCCTATCACTGGACCTGCTGGTAATATAGAATTT
TTAGCTTTTTTAAGTCAGGGTTCACAGAGTACTTCGAACACTTCAATGGATCAAATAGTAACACAAGTTGTAAAAAATGC
CCATGAATACTTTAAAGGAGGCTCTTTATGA

Upstream 100 bases:

>100_bases
TATATTCCGCATGGTGATAGATCTAAAGTACTAAGTCAATATAGTTTACATTCCCAGGAATTAATAAATAAAATATTAAA
TCGCCTTAGAGGTGAACAGA

Downstream 100 bases:

>100_bases
GGAGTGTAGGTTTAATACCCAACATTCAAAAAGATCAAGTAGCGGAAATTACAAGTAGAATGTATAAAATCCTATCAGAA
CACGATATTGATGTGTACTT

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MSKDKNRLDQLLVDKGYFASREQAKRNIMAGLVFVDNQKIDKPGKKVHLDVPLYVKNDHLKYVSRGGYKLEKALDEFSVN
VEDRIAVDIGASTGGFTDCLLANGAAHVYAVDVGYGQLAWRLRNSQQVTVHEKTNIRHVNSDLFDDIPDLATIDVSFISL
RLVIPIVNEILAHPKDILVLIKPQFEADKDQVGKKGVIKDKDIQIEVLHKVLDMAKTDLNFNVCGLTFSPITGPAGNIEF
LAFLSQGSQSTSNTSMDQIVTQVVKNAHEYFKGGSL

Sequences:

>Translated_276_residues
MSKDKNRLDQLLVDKGYFASREQAKRNIMAGLVFVDNQKIDKPGKKVHLDVPLYVKNDHLKYVSRGGYKLEKALDEFSVN
VEDRIAVDIGASTGGFTDCLLANGAAHVYAVDVGYGQLAWRLRNSQQVTVHEKTNIRHVNSDLFDDIPDLATIDVSFISL
RLVIPIVNEILAHPKDILVLIKPQFEADKDQVGKKGVIKDKDIQIEVLHKVLDMAKTDLNFNVCGLTFSPITGPAGNIEF
LAFLSQGSQSTSNTSMDQIVTQVVKNAHEYFKGGSL
>Mature_275_residues
SKDKNRLDQLLVDKGYFASREQAKRNIMAGLVFVDNQKIDKPGKKVHLDVPLYVKNDHLKYVSRGGYKLEKALDEFSVNV
EDRIAVDIGASTGGFTDCLLANGAAHVYAVDVGYGQLAWRLRNSQQVTVHEKTNIRHVNSDLFDDIPDLATIDVSFISLR
LVIPIVNEILAHPKDILVLIKPQFEADKDQVGKKGVIKDKDIQIEVLHKVLDMAKTDLNFNVCGLTFSPITGPAGNIEFL
AFLSQGSQSTSNTSMDQIVTQVVKNAHEYFKGGSL

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30595; Mature: 30464

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKDKNRLDQLLVDKGYFASREQAKRNIMAGLVFVDNQKIDKPGKKVHLDVPLYVKNDHL
CCCCHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEEECCCCCCCCCEEEEEEEEEEECCCE
KYVSRGGYKLEKALDEFSVNVEDRIAVDIGASTGGFTDCLLANGAAHVYAVDVGYGQLAW
EEHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCCCCCEEEEEECCCCEEEE
RLRNSQQVTVHEKTNIRHVNSDLFDDIPDLATIDVSFISLRLVIPIVNEILAHPKDILVL
EECCCCEEEEEECCCCEECCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEE
IKPQFEADKDQVGKKGVIKDKDIQIEVLHKVLDMAKTDLNFNVCGLTFSPITGPAGNIEF
ECCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEE
LAFLSQGSQSTSNTSMDQIVTQVVKNAHEYFKGGSL
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SKDKNRLDQLLVDKGYFASREQAKRNIMAGLVFVDNQKIDKPGKKVHLDVPLYVKNDHL
CCCHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEEECCCCCCCCCEEEEEEEEEEECCCE
KYVSRGGYKLEKALDEFSVNVEDRIAVDIGASTGGFTDCLLANGAAHVYAVDVGYGQLAW
EEHHCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCCCCCEEEEEECCCCEEEE
RLRNSQQVTVHEKTNIRHVNSDLFDDIPDLATIDVSFISLRLVIPIVNEILAHPKDILVL
EECCCCEEEEEECCCCEECCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCEEEEE
IKPQFEADKDQVGKKGVIKDKDIQIEVLHKVLDMAKTDLNFNVCGLTFSPITGPAGNIEF
ECCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEE
LAFLSQGSQSTSNTSMDQIVTQVVKNAHEYFKGGSL
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]