Click here to switch to the map view.

The map label for this gene is deoB [H]

Identifier: 188586284

GI number: 188586284

Start: 1743563

End: 1744741

Strand: Reverse

Name: deoB [H]

Synonym: Nther_1667

Alternate gene names: 188586284

Gene position: 1744741-1743563 (Counterclockwise)

Preceding gene: 188586285

Following gene: 188586283

Centisome position: 55.12

GC content: 36.13

Gene sequence:

>1179_bases
GTGCAAGTAAACAGAGTTATTGTCCTTGTTCTTGACAGTCTGGGAATTGGCGCTTTACCAGATGCATCTAAATATGGCGA
TGAAGGTAGTAATACCTTAAAACATATCGCCGATAACGTATCGGGATTTTATTTACCAAATTTACATAATCTAGGTCTCG
GGAATATTGTTAATTTTAAAGGATTGGAGGCCTTGGAGGATCCTTTGGGATATTATGGTAAAATGATGGAACAATCTCCT
GGTAAAGATACAACTACAGGACATTGGGAACTAGCCGGAAACGTATTAGATCGTCCTTTCCCCGTATATCCTGAAGGTTT
TCCATCAGAGTTAATAGAACAATTTGAAAATCAAATTGGGAAAAAAACTTTAGGAAATTATCCTGCTTCGGGTACTGCTA
TTATTAAAGAACTAGGCAAAGAGCATGAAGACACCGGGTATCCTATAGTTTATACATCTGCTGACAGTGTTTTTCAAATA
GCTGCTCATGAAGAAATCATACCTCCTCAAAAATTGTATGATATCTGTGAAATTGCTCGTGAATTACTAACTGGAGAACA
CGGGGTAGGCAGAGTCATTGCTAGACCTTTTGTTGGAAAATTTCCGGATTATACCAGAACGGAAAATCGTAGAGATTTCT
CCCTAGCACCACCAGAAGGTAATATGCTTGACTTAATTAAAGAACAAGGTTATGACGTAGTTGGGATTGGCAAAGTAAAG
GATATATATGCTAATAAAGGGCTTACTGAAACTTATCCAACTAAAAGTAATGCTGATGGTATCGATAAAACAACTGAATT
GCTTAATGAAAATAATCAAGGTCTAATTATGACAAATCTAGTGGATTTTGATATGCTCTATGGACACAGAAATGACCCAG
AAGGTTATTACAAAGCTTTATTTGAATTTGATAATAGTTTACCTAATATCTTAGCGAGTTTAAATGATGATGATATCTTA
ATCATCACGGCTGATCACGGTTGTGACCCATTACATCCTGGTACAGATCATACCAGAGAATATGTACCAATTTTAATTTA
TAATCACAAACTGGAAAATCCAACTTCCATAGGAACAAGATCAAGTTTTGCTGATATGGGCCAAACAATTACTGACTTAC
TTAACGTTGGTGCAACTGCCCATGGTAGCAGCTTTAAAGATCAGCTAAATTTTAGATAA

Upstream 100 bases:

>100_bases
ACTACACAGATATATACTCACTTAACAAAACAACGCCTAAAGGACGTTTATTCAAAATCTCATCCCAGGGCTTAAAGCCT
GGAGAAGGAGGTATTTACTA

Downstream 100 bases:

>100_bases
AGATTTCTATATTTCTATATAAAGGAGGTTTTTAATATGGATTTTCATAAAATAACAGAAGCTAAGGAGTATATATTGAA
TCAGTGTGATGAAGTTCCAT

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MQVNRVIVLVLDSLGIGALPDASKYGDEGSNTLKHIADNVSGFYLPNLHNLGLGNIVNFKGLEALEDPLGYYGKMMEQSP
GKDTTTGHWELAGNVLDRPFPVYPEGFPSELIEQFENQIGKKTLGNYPASGTAIIKELGKEHEDTGYPIVYTSADSVFQI
AAHEEIIPPQKLYDICEIARELLTGEHGVGRVIARPFVGKFPDYTRTENRRDFSLAPPEGNMLDLIKEQGYDVVGIGKVK
DIYANKGLTETYPTKSNADGIDKTTELLNENNQGLIMTNLVDFDMLYGHRNDPEGYYKALFEFDNSLPNILASLNDDDIL
IITADHGCDPLHPGTDHTREYVPILIYNHKLENPTSIGTRSSFADMGQTITDLLNVGATAHGSSFKDQLNFR

Sequences:

>Translated_392_residues
MQVNRVIVLVLDSLGIGALPDASKYGDEGSNTLKHIADNVSGFYLPNLHNLGLGNIVNFKGLEALEDPLGYYGKMMEQSP
GKDTTTGHWELAGNVLDRPFPVYPEGFPSELIEQFENQIGKKTLGNYPASGTAIIKELGKEHEDTGYPIVYTSADSVFQI
AAHEEIIPPQKLYDICEIARELLTGEHGVGRVIARPFVGKFPDYTRTENRRDFSLAPPEGNMLDLIKEQGYDVVGIGKVK
DIYANKGLTETYPTKSNADGIDKTTELLNENNQGLIMTNLVDFDMLYGHRNDPEGYYKALFEFDNSLPNILASLNDDDIL
IITADHGCDPLHPGTDHTREYVPILIYNHKLENPTSIGTRSSFADMGQTITDLLNVGATAHGSSFKDQLNFR
>Mature_392_residues
MQVNRVIVLVLDSLGIGALPDASKYGDEGSNTLKHIADNVSGFYLPNLHNLGLGNIVNFKGLEALEDPLGYYGKMMEQSP
GKDTTTGHWELAGNVLDRPFPVYPEGFPSELIEQFENQIGKKTLGNYPASGTAIIKELGKEHEDTGYPIVYTSADSVFQI
AAHEEIIPPQKLYDICEIARELLTGEHGVGRVIARPFVGKFPDYTRTENRRDFSLAPPEGNMLDLIKEQGYDVVGIGKVK
DIYANKGLTETYPTKSNADGIDKTTELLNENNQGLIMTNLVDFDMLYGHRNDPEGYYKALFEFDNSLPNILASLNDDDIL
IITADHGCDPLHPGTDHTREYVPILIYNHKLENPTSIGTRSSFADMGQTITDLLNVGATAHGSSFKDQLNFR

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=411, Percent_Identity=44.0389294403893, Blast_Score=307, Evalue=7e-85,
Organism=Escherichia coli, GI1789781, Length=423, Percent_Identity=26.9503546099291, Blast_Score=119, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 43312; Mature: 43312

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVNRVIVLVLDSLGIGALPDASKYGDEGSNTLKHIADNVSGFYLPNLHNLGLGNIVNFK
CCCCEEEEEEEECCCCCCCCCCHHCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCC
GLEALEDPLGYYGKMMEQSPGKDTTTGHWELAGNVLDRPFPVYPEGFPSELIEQFENQIG
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHCCCCCCCCCCCHHHHHHHHHHHHH
KKTLGNYPASGTAIIKELGKEHEDTGYPIVYTSADSVFQIAAHEEIIPPQKLYDICEIAR
HHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCEEEEHHCCCCCCHHHHHHHHHHHH
ELLTGEHGVGRVIARPFVGKFPDYTRTENRRDFSLAPPEGNMLDLIKEQGYDVVGIGKVK
HHHCCCCCCHHHHHCCHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHCCCCEEEECCHH
DIYANKGLTETYPTKSNADGIDKTTELLNENNQGLIMTNLVDFDMLYGHRNDPEGYYKAL
HHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEHHHHHHHHCCCCCCHHHHHHH
FEFDNSLPNILASLNDDDILIITADHGCDPLHPGTDHTREYVPILIYNHKLENPTSIGTR
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
SSFADMGQTITDLLNVGATAHGSSFKDQLNFR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCC
>Mature Secondary Structure
MQVNRVIVLVLDSLGIGALPDASKYGDEGSNTLKHIADNVSGFYLPNLHNLGLGNIVNFK
CCCCEEEEEEEECCCCCCCCCCHHCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCCCC
GLEALEDPLGYYGKMMEQSPGKDTTTGHWELAGNVLDRPFPVYPEGFPSELIEQFENQIG
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECHHHCCCCCCCCCCCHHHHHHHHHHHHH
KKTLGNYPASGTAIIKELGKEHEDTGYPIVYTSADSVFQIAAHEEIIPPQKLYDICEIAR
HHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCEEEEHHCCCCCCHHHHHHHHHHHH
ELLTGEHGVGRVIARPFVGKFPDYTRTENRRDFSLAPPEGNMLDLIKEQGYDVVGIGKVK
HHHCCCCCCHHHHHCCHHCCCCCCCCCCCCCCCEECCCCCCHHHHHHHCCCCEEEECCHH
DIYANKGLTETYPTKSNADGIDKTTELLNENNQGLIMTNLVDFDMLYGHRNDPEGYYKAL
HHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEEHHHHHHHHCCCCCCHHHHHHH
FEFDNSLPNILASLNDDDILIITADHGCDPLHPGTDHTREYVPILIYNHKLENPTSIGTR
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
SSFADMGQTITDLLNVGATAHGSSFKDQLNFR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA