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The map label for this gene is 188584779

Identifier: 188584779

GI number: 188584779

Start: 160902

End: 161681

Strand: Direct

Name: 188584779

Synonym: Nther_0137

Alternate gene names: NA

Gene position: 160902-161681 (Clockwise)

Preceding gene: 188584778

Following gene: 188584781

Centisome position: 5.08

GC content: 35.77

Gene sequence:

>780_bases
GTGCGACCTTTATGGAAAGGAGCAATTAGTTTCGGCTTAGTTAACGTTCCTGTGAAAATGTACGCTGCTACCGAAAAAAA
GAATGTAAAATTTAGATACCTCCACAGGGACTGTAATGCTCCCGTAGAATATAAAAGAGTTTGTTCAAACTGTAAAAAGG
AAGTGCCTTATGAAGAAATAGTCAAAGGTTATGAATATGAACCAGGTAAGTTTGTAGTACTAGAAGATGAAGACTTTGAG
GCATTGCCCCAGGAGGAAGCACGTTCTATCAACATTGTTGAATTTGTAAATTTATCAGAAATAGATCCAGTTTACTATGA
TAAAACTTACTATTTGACACCTCAAGAAACAGGTGAAAAACCATACCAACTATTGAAACAAGTGTTGAAAGAAAAGGGAA
AAGTTGCAGTTTGTAAAGTTGTAATTAGATCCAAGTCTAATTTATCTTGTATTAGAATTTATGACGAAGTTTTGACTTTA
GAAACTATGTATTTCCCTGATGAAGTCAGAAATCCTAAAGAAGAACTAGAGATTGAAGAGCAGCCAGAGGTCATGTCAAG
GGAATTAGAGATGGCTGGACAATTAGTTGACAGTTTAGAAGGGGAATTTCAACCAGAGAACTATCAGGACGAATACCGTG
AGCATCTCATGGATTTAATTAAGGCTAAAATTCATGATGAAGATGTAACAATTCCAGAGAGACCTAAAGACGAACGTGTT
GTCAATTTGATGGAGGCATTAGAAAAAAGTGTTGACTTAGTCAAAGAAAAATCCGGATAG

Upstream 100 bases:

>100_bases
ATTAATTGACTTACCCGTCTTTAGGACGGGTTTTTTTGTATTATTTTATTAGTTACGTTGAATGCTAACAGTAAGACTAA
AAAATTGGAGGTTTAAGATA

Downstream 100 bases:

>100_bases
AGCTCAAATTATAAAACCATTTATAACAGGATGCCGTAGATTTCCTCCTGGAGTCCAATTAGTATATTTTACCTGTAGCT
TTAATTGTGGAGACAAAAAA

Product: Ku protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MRPLWKGAISFGLVNVPVKMYAATEKKNVKFRYLHRDCNAPVEYKRVCSNCKKEVPYEEIVKGYEYEPGKFVVLEDEDFE
ALPQEEARSINIVEFVNLSEIDPVYYDKTYYLTPQETGEKPYQLLKQVLKEKGKVAVCKVVIRSKSNLSCIRIYDEVLTL
ETMYFPDEVRNPKEELEIEEQPEVMSRELEMAGQLVDSLEGEFQPENYQDEYREHLMDLIKAKIHDEDVTIPERPKDERV
VNLMEALEKSVDLVKEKSG

Sequences:

>Translated_259_residues
MRPLWKGAISFGLVNVPVKMYAATEKKNVKFRYLHRDCNAPVEYKRVCSNCKKEVPYEEIVKGYEYEPGKFVVLEDEDFE
ALPQEEARSINIVEFVNLSEIDPVYYDKTYYLTPQETGEKPYQLLKQVLKEKGKVAVCKVVIRSKSNLSCIRIYDEVLTL
ETMYFPDEVRNPKEELEIEEQPEVMSRELEMAGQLVDSLEGEFQPENYQDEYREHLMDLIKAKIHDEDVTIPERPKDERV
VNLMEALEKSVDLVKEKSG
>Mature_259_residues
MRPLWKGAISFGLVNVPVKMYAATEKKNVKFRYLHRDCNAPVEYKRVCSNCKKEVPYEEIVKGYEYEPGKFVVLEDEDFE
ALPQEEARSINIVEFVNLSEIDPVYYDKTYYLTPQETGEKPYQLLKQVLKEKGKVAVCKVVIRSKSNLSCIRIYDEVLTL
ETMYFPDEVRNPKEELEIEEQPEVMSRELEMAGQLVDSLEGEFQPENYQDEYREHLMDLIKAKIHDEDVTIPERPKDERV
VNLMEALEKSVDLVKEKSG

Specific function: Could be involved in DNA repair [H]

COG id: COG1273

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ku domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006164
- InterPro:   IPR009187
- InterPro:   IPR016194 [H]

Pfam domain/function: PF02735 Ku [H]

EC number: NA

Molecular weight: Translated: 30290; Mature: 30290

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPLWKGAISFGLVNVPVKMYAATEKKNVKFRYLHRDCNAPVEYKRVCSNCKKEVPYEEI
CCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHH
VKGYEYEPGKFVVLEDEDFEALPQEEARSINIVEFVNLSEIDPVYYDKTYYLTPQETGEK
HCCCCCCCCCEEEEECCCCCCCCHHHHCCCCEEEECCCCCCCCEEECCEEEECCHHCCCH
PYQLLKQVLKEKGKVAVCKVVIRSKSNLSCIRIYDEVLTLETMYFPDEVRNPKEELEIEE
HHHHHHHHHHHCCCEEEHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHCCCHHHCCCCC
QPEVMSRELEMAGQLVDSLEGEFQPENYQDEYREHLMDLIKAKIHDEDVTIPERPKDERV
CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
VNLMEALEKSVDLVKEKSG
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRPLWKGAISFGLVNVPVKMYAATEKKNVKFRYLHRDCNAPVEYKRVCSNCKKEVPYEEI
CCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHH
VKGYEYEPGKFVVLEDEDFEALPQEEARSINIVEFVNLSEIDPVYYDKTYYLTPQETGEK
HCCCCCCCCCEEEEECCCCCCCCHHHHCCCCEEEECCCCCCCCEEECCEEEECCHHCCCH
PYQLLKQVLKEKGKVAVCKVVIRSKSNLSCIRIYDEVLTLETMYFPDEVRNPKEELEIEE
HHHHHHHHHHHCCCEEEHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHCCCHHHCCCCC
QPEVMSRELEMAGQLVDSLEGEFQPENYQDEYREHLMDLIKAKIHDEDVTIPERPKDERV
CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
VNLMEALEKSVDLVKEKSG
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA