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The map label for this gene is ykoU [H]

Identifier: 188584781

GI number: 188584781

Start: 162817

End: 163737

Strand: Direct

Name: ykoU [H]

Synonym: Nther_0139

Alternate gene names: 188584781

Gene position: 162817-163737 (Clockwise)

Preceding gene: 188584779

Following gene: 188584783

Centisome position: 5.14

GC content: 35.94

Gene sequence:

>921_bases
TTGAGATATATGGTCAATAGTCAAACCTTAGATGTCCACGGACGCGAAGTTGTGTTAACTAATTTATTAAAACCTATCTG
GCCAGAAAAAGATATTACAAAATATGACTTAATCAAATACTTTCTTGATATGTCACCTTATATATTGCCCCATTTAAAAA
ATCGTCCTTTGGTTATAACTAGGTTCCCTGAAGGTGTGCATAAGGAAGGATTTTATCAGAAAGATATTAAGAAAGCAGGT
AATTCACCTTCCTGGTTAAAAACAATTACAATTCCGACTAAAAATAAAGAAAGAGAAAGACAAGTTATAGACTATTTAGT
TGTAGATCATCCAGCAACTTTGGTATGGCTGGGGAATTTAGCGGCTGTAGAACTTCATCCATGGTTATCAAGTGTAGAGT
CTTTAGATTATCCGGATTTTGGTGTTTTTGACTTAGATCCCATGCCCCAAGCTGACTTTTATCAAGTTAAAACTCTAGCT
TTCAGTATCAAAAAAATTTTAAATCAGCTTGAGATAACAGGTTATCCCAAGCTGACAGGCTCTAGTGGCTTACAAATATT
TGTACCTTTTTATCCCAAATATACTTATCAAGAAATCCGAGAATTCATTCATAAAGTATGTTTGCAGGTTTTGGATCACC
ATGCTGATATTGCAACGATTGAGCGCAAAGTAAATCAGCGTCCCTCTCATAAGGTTTATCTGGATTATTTGCAAAATGCA
AAAGGTAAAACAATTTCTGCTATTTATGGCCCTAGAGCCAACAAGGGCGCTCATGTGTCGGTTCCGGTTAACTGGGAGGA
ACTGGCGAATATTGAAACATCCCGACAGTATGATGTGCTATCTGTAGGAGCTCGGATGAAAAATACCGGCGATGTATTTA
AAACCATCTTAGAGAATAAACAAAAATTAAACTTTTGCTAA

Upstream 100 bases:

>100_bases
AATGTTGATAACTGTTAAATTTCATTTCACTAAAAAATGCTTAAGTTTGATATATCTTGGACTTGGATTCAGGTATTAAT
AGTAGAAATAGGTGGTGAAT

Downstream 100 bases:

>100_bases
TATATTCTTGTGAGAAGATTATATGTTATAATCTGACATATCATCTTGAATTATCCTGGCTAATATTGCTACCCTCTTCA
GGTGACCATTTATTTGACCA

Product: DNA polymerase LigD, polymerase domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MRYMVNSQTLDVHGREVVLTNLLKPIWPEKDITKYDLIKYFLDMSPYILPHLKNRPLVITRFPEGVHKEGFYQKDIKKAG
NSPSWLKTITIPTKNKERERQVIDYLVVDHPATLVWLGNLAAVELHPWLSSVESLDYPDFGVFDLDPMPQADFYQVKTLA
FSIKKILNQLEITGYPKLTGSSGLQIFVPFYPKYTYQEIREFIHKVCLQVLDHHADIATIERKVNQRPSHKVYLDYLQNA
KGKTISAIYGPRANKGAHVSVPVNWEELANIETSRQYDVLSVGARMKNTGDVFKTILENKQKLNFC

Sequences:

>Translated_306_residues
MRYMVNSQTLDVHGREVVLTNLLKPIWPEKDITKYDLIKYFLDMSPYILPHLKNRPLVITRFPEGVHKEGFYQKDIKKAG
NSPSWLKTITIPTKNKERERQVIDYLVVDHPATLVWLGNLAAVELHPWLSSVESLDYPDFGVFDLDPMPQADFYQVKTLA
FSIKKILNQLEITGYPKLTGSSGLQIFVPFYPKYTYQEIREFIHKVCLQVLDHHADIATIERKVNQRPSHKVYLDYLQNA
KGKTISAIYGPRANKGAHVSVPVNWEELANIETSRQYDVLSVGARMKNTGDVFKTILENKQKLNFC
>Mature_306_residues
MRYMVNSQTLDVHGREVVLTNLLKPIWPEKDITKYDLIKYFLDMSPYILPHLKNRPLVITRFPEGVHKEGFYQKDIKKAG
NSPSWLKTITIPTKNKERERQVIDYLVVDHPATLVWLGNLAAVELHPWLSSVESLDYPDFGVFDLDPMPQADFYQVKTLA
FSIKKILNQLEITGYPKLTGSSGLQIFVPFYPKYTYQEIREFIHKVCLQVLDHHADIATIERKVNQRPSHKVYLDYLQNA
KGKTISAIYGPRANKGAHVSVPVNWEELANIETSRQYDVLSVGARMKNTGDVFKTILENKQKLNFC

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 35321; Mature: 35321

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYMVNSQTLDVHGREVVLTNLLKPIWPEKDITKYDLIKYFLDMSPYILPHLKNRPLVIT
CCEEECCCEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEE
RFPEGVHKEGFYQKDIKKAGNSPSWLKTITIPTKNKERERQVIDYLVVDHPATLVWLGNL
ECCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCE
AAVELHPWLSSVESLDYPDFGVFDLDPMPQADFYQVKTLAFSIKKILNQLEITGYPKLTG
EEEEECHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SSGLQIFVPFYPKYTYQEIREFIHKVCLQVLDHHADIATIERKVNQRPSHKVYLDYLQNA
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEHHHHHHCC
KGKTISAIYGPRANKGAHVSVPVNWEELANIETSRQYDVLSVGARMKNTGDVFKTILENK
CCCEEEEEECCCCCCCCEEEECCCHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCC
QKLNFC
HHCCCC
>Mature Secondary Structure
MRYMVNSQTLDVHGREVVLTNLLKPIWPEKDITKYDLIKYFLDMSPYILPHLKNRPLVIT
CCEEECCCEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEE
RFPEGVHKEGFYQKDIKKAGNSPSWLKTITIPTKNKERERQVIDYLVVDHPATLVWLGNL
ECCCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCE
AAVELHPWLSSVESLDYPDFGVFDLDPMPQADFYQVKTLAFSIKKILNQLEITGYPKLTG
EEEEECHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SSGLQIFVPFYPKYTYQEIREFIHKVCLQVLDHHADIATIERKVNQRPSHKVYLDYLQNA
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEHHHHHHCC
KGKTISAIYGPRANKGAHVSVPVNWEELANIETSRQYDVLSVGARMKNTGDVFKTILENK
CCCEEEEEECCCCCCCCEEEECCCHHHHHCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCC
QKLNFC
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]