Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

Click here to switch to the map view.

The map label for this gene is 188527600

Identifier: 188527600

GI number: 188527600

Start: 797699

End: 798520

Strand: Reverse

Name: 188527600

Synonym: HPSH_04110

Alternate gene names: NA

Gene position: 798520-797699 (Counterclockwise)

Preceding gene: 188527601

Following gene: 188527598

Centisome position: 49.64

GC content: 37.23

Gene sequence:

>822_bases
ATGAAAAACCTTTTTTTAGCTTTTGTTGTTGGGGGAACGCTATTAAGCGCTGATGCTTTAAACGATAAGATTGAGAATTT
AATGGGGGAGCGGGCTTATCATACGAACAAGCTTTTTTTAGAGCGTTTGTTTAAAAATCGTAAGGATTTCTATGTAATGG
GGCGTTTGGATTCCTTGAAACTGCTCAACACTCTCAAAGAAAACGGGCTTTTGTCTTTTAATTTTGACAAGCCAGACATG
TTAAAAATCACTTTCAAGGCTTCAAGCAATCCCCTAGCGTTTGCCAAAAGCATCAATAATTCTTTGAGCATGATGGGGTA
TTCGTATGTTTTGCCCATTAAGATGCAAAGCTCTTTAGGCGAGAATGTTTTTTCATACGAGCTTAAAACGGAATATGTTT
TAGACCCTAACATTTTGATAGAGACAATGAAAGGGCATGGTTTTAATTTTGTGGATATTAGGCGCATATCCTTGAAAGAG
TGGGAATACGATTTTTCTTTACAAGAAGTCAAGCTCCCTAACGCGAGAGTCTTAGTTTTGAGTAGCGATCCTGTGGAGTT
TAAGGAAGCGAGCGGGAAGTATTGGCTGAGCGTGAATCAGAACGCATATTTAAAAATAAGCTCCAATAACCCTTTATGGC
AACCCAAAGTGATCTTTTATGATGAAAACTTAAAGATCATTCAAATCATTGCTAAAGAAAACAAACAACAAGAAATCGCT
CTTAATTTGCTTGATGGCGTGCATTTTATCCATATCACTGACGCAAAAAACCCTATCATTTTAAAAAATGGGATTAGCGT
GGTTTTTGATGCGATGCCTTAA

Upstream 100 bases:

>100_bases
AAGCACAAAATTATAACGATAACAAAGCTAGGCGGTTTTTATACGAGCCGGCTAAAGGCTTGACGCTCATCAATGAGGCC
CAATACAAAGAACTCCAGCA

Downstream 100 bases:

>100_bases
GTAGGGGGTAACCTTATTAATTGGAATAAAACAGCTTACTAATAAGCCAAGCTTTCGCTTCTATAAAAAGGACAGCCCAC
CACCAATTAATAAACCATAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKNLFLAFVVGGTLLSADALNDKIENLMGERAYHTNKLFLERLFKNRKDFYVMGRLDSLKLLNTLKENGLLSFNFDKPDM
LKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSLGENVFSYELKTEYVLDPNILIETMKGHGFNFVDIRRISLKE
WEYDFSLQEVKLPNARVLVLSSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKVIFYDENLKIIQIIAKENKQQEIA
LNLLDGVHFIHITDAKNPIILKNGISVVFDAMP

Sequences:

>Translated_273_residues
MKNLFLAFVVGGTLLSADALNDKIENLMGERAYHTNKLFLERLFKNRKDFYVMGRLDSLKLLNTLKENGLLSFNFDKPDM
LKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSLGENVFSYELKTEYVLDPNILIETMKGHGFNFVDIRRISLKE
WEYDFSLQEVKLPNARVLVLSSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKVIFYDENLKIIQIIAKENKQQEIA
LNLLDGVHFIHITDAKNPIILKNGISVVFDAMP
>Mature_273_residues
MKNLFLAFVVGGTLLSADALNDKIENLMGERAYHTNKLFLERLFKNRKDFYVMGRLDSLKLLNTLKENGLLSFNFDKPDM
LKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSLGENVFSYELKTEYVLDPNILIETMKGHGFNFVDIRRISLKE
WEYDFSLQEVKLPNARVLVLSSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKVIFYDENLKIIQIIAKENKQQEIA
LNLLDGVHFIHITDAKNPIILKNGISVVFDAMP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31274; Mature: 31274

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLFLAFVVGGTLLSADALNDKIENLMGERAYHTNKLFLERLFKNRKDFYVMGRLDSLK
CCCEEEEEEECCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHH
LLNTLKENGLLSFNFDKPDMLKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSLG
HHHHHHHCCEEEEECCCCCEEEEEEECCCCCEEEHHHCCCCHHHCCEEEEEEEEECCCCC
ENVFSYELKTEYVLDPNILIETMKGHGFNFVDIRRISLKEWEYDFSLQEVKLPNARVLVL
CCEEEEEEEEEEEECCCEEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEECCCCEEEEE
SSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKVIFYDENLKIIQIIAKENKQQEIA
ECCCCHHHHCCCEEEEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEEEECCCCCHHHE
LNLLDGVHFIHITDAKNPIILKNGISVVFDAMP
EEEECCEEEEEEECCCCCEEEECCCEEEEECCC
>Mature Secondary Structure
MKNLFLAFVVGGTLLSADALNDKIENLMGERAYHTNKLFLERLFKNRKDFYVMGRLDSLK
CCCEEEEEEECCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHH
LLNTLKENGLLSFNFDKPDMLKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSLG
HHHHHHHCCEEEEECCCCCEEEEEEECCCCCEEEHHHCCCCHHHCCEEEEEEEEECCCCC
ENVFSYELKTEYVLDPNILIETMKGHGFNFVDIRRISLKEWEYDFSLQEVKLPNARVLVL
CCEEEEEEEEEEEECCCEEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEECCCCEEEEE
SSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKVIFYDENLKIIQIIAKENKQQEIA
ECCCCHHHHCCCEEEEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEEEECCCCCHHHE
LNLLDGVHFIHITDAKNPIILKNGISVVFDAMP
EEEECCEEEEEEECCCCCEEEECCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA