| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is 188527600
Identifier: 188527600
GI number: 188527600
Start: 797699
End: 798520
Strand: Reverse
Name: 188527600
Synonym: HPSH_04110
Alternate gene names: NA
Gene position: 798520-797699 (Counterclockwise)
Preceding gene: 188527601
Following gene: 188527598
Centisome position: 49.64
GC content: 37.23
Gene sequence:
>822_bases ATGAAAAACCTTTTTTTAGCTTTTGTTGTTGGGGGAACGCTATTAAGCGCTGATGCTTTAAACGATAAGATTGAGAATTT AATGGGGGAGCGGGCTTATCATACGAACAAGCTTTTTTTAGAGCGTTTGTTTAAAAATCGTAAGGATTTCTATGTAATGG GGCGTTTGGATTCCTTGAAACTGCTCAACACTCTCAAAGAAAACGGGCTTTTGTCTTTTAATTTTGACAAGCCAGACATG TTAAAAATCACTTTCAAGGCTTCAAGCAATCCCCTAGCGTTTGCCAAAAGCATCAATAATTCTTTGAGCATGATGGGGTA TTCGTATGTTTTGCCCATTAAGATGCAAAGCTCTTTAGGCGAGAATGTTTTTTCATACGAGCTTAAAACGGAATATGTTT TAGACCCTAACATTTTGATAGAGACAATGAAAGGGCATGGTTTTAATTTTGTGGATATTAGGCGCATATCCTTGAAAGAG TGGGAATACGATTTTTCTTTACAAGAAGTCAAGCTCCCTAACGCGAGAGTCTTAGTTTTGAGTAGCGATCCTGTGGAGTT TAAGGAAGCGAGCGGGAAGTATTGGCTGAGCGTGAATCAGAACGCATATTTAAAAATAAGCTCCAATAACCCTTTATGGC AACCCAAAGTGATCTTTTATGATGAAAACTTAAAGATCATTCAAATCATTGCTAAAGAAAACAAACAACAAGAAATCGCT CTTAATTTGCTTGATGGCGTGCATTTTATCCATATCACTGACGCAAAAAACCCTATCATTTTAAAAAATGGGATTAGCGT GGTTTTTGATGCGATGCCTTAA
Upstream 100 bases:
>100_bases AAGCACAAAATTATAACGATAACAAAGCTAGGCGGTTTTTATACGAGCCGGCTAAAGGCTTGACGCTCATCAATGAGGCC CAATACAAAGAACTCCAGCA
Downstream 100 bases:
>100_bases GTAGGGGGTAACCTTATTAATTGGAATAAAACAGCTTACTAATAAGCCAAGCTTTCGCTTCTATAAAAAGGACAGCCCAC CACCAATTAATAAACCATAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 273; Mature: 273
Protein sequence:
>273_residues MKNLFLAFVVGGTLLSADALNDKIENLMGERAYHTNKLFLERLFKNRKDFYVMGRLDSLKLLNTLKENGLLSFNFDKPDM LKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSLGENVFSYELKTEYVLDPNILIETMKGHGFNFVDIRRISLKE WEYDFSLQEVKLPNARVLVLSSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKVIFYDENLKIIQIIAKENKQQEIA LNLLDGVHFIHITDAKNPIILKNGISVVFDAMP
Sequences:
>Translated_273_residues MKNLFLAFVVGGTLLSADALNDKIENLMGERAYHTNKLFLERLFKNRKDFYVMGRLDSLKLLNTLKENGLLSFNFDKPDM LKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSLGENVFSYELKTEYVLDPNILIETMKGHGFNFVDIRRISLKE WEYDFSLQEVKLPNARVLVLSSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKVIFYDENLKIIQIIAKENKQQEIA LNLLDGVHFIHITDAKNPIILKNGISVVFDAMP >Mature_273_residues MKNLFLAFVVGGTLLSADALNDKIENLMGERAYHTNKLFLERLFKNRKDFYVMGRLDSLKLLNTLKENGLLSFNFDKPDM LKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSLGENVFSYELKTEYVLDPNILIETMKGHGFNFVDIRRISLKE WEYDFSLQEVKLPNARVLVLSSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKVIFYDENLKIIQIIAKENKQQEIA LNLLDGVHFIHITDAKNPIILKNGISVVFDAMP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31274; Mature: 31274
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNLFLAFVVGGTLLSADALNDKIENLMGERAYHTNKLFLERLFKNRKDFYVMGRLDSLK CCCEEEEEEECCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHH LLNTLKENGLLSFNFDKPDMLKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSLG HHHHHHHCCEEEEECCCCCEEEEEEECCCCCEEEHHHCCCCHHHCCEEEEEEEEECCCCC ENVFSYELKTEYVLDPNILIETMKGHGFNFVDIRRISLKEWEYDFSLQEVKLPNARVLVL CCEEEEEEEEEEEECCCEEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEECCCCEEEEE SSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKVIFYDENLKIIQIIAKENKQQEIA ECCCCHHHHCCCEEEEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEEEECCCCCHHHE LNLLDGVHFIHITDAKNPIILKNGISVVFDAMP EEEECCEEEEEEECCCCCEEEECCCEEEEECCC >Mature Secondary Structure MKNLFLAFVVGGTLLSADALNDKIENLMGERAYHTNKLFLERLFKNRKDFYVMGRLDSLK CCCEEEEEEECCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEEECCCHHH LLNTLKENGLLSFNFDKPDMLKITFKASSNPLAFAKSINNSLSMMGYSYVLPIKMQSSLG HHHHHHHCCEEEEECCCCCEEEEEEECCCCCEEEHHHCCCCHHHCCEEEEEEEEECCCCC ENVFSYELKTEYVLDPNILIETMKGHGFNFVDIRRISLKEWEYDFSLQEVKLPNARVLVL CCEEEEEEEEEEEECCCEEEEEECCCCCCEEEEEEEEEECCCCCCCEEEEECCCCEEEEE SSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKVIFYDENLKIIQIIAKENKQQEIA ECCCCHHHHCCCEEEEEECCCEEEEECCCCCCCCCEEEEEECCCEEEEEEECCCCCHHHE LNLLDGVHFIHITDAKNPIILKNGISVVFDAMP EEEECCEEEEEEECCCCCEEEECCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA