| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527601
Identifier: 188527601
GI number: 188527601
Start: 798517
End: 799491
Strand: Reverse
Name: 188527601
Synonym: HPSH_04115
Alternate gene names: NA
Gene position: 799491-798517 (Counterclockwise)
Preceding gene: 188527602
Following gene: 188527600
Centisome position: 49.7
GC content: 34.77
Gene sequence:
>975_bases ATGGAACAGCATAAAAAAAGTTTAGAAAATTTAGATCTTACTGATGTTCAAAACATTTCTAAAGATATTTCTGGTGCGGC ATTGGAAGAATTATCGCTTAAAAATTTAGATAAAAATTTGCAAATTTTAAGAGAGATTGGCATACAAGAAATTTACAAAG CGACTAAAATCGCTTCTAAAAATATCAACTACATATTAGAAAAGCGTTATGAGTCTTTATCAAGGGTGCGTGCTAGGGGC TTTATACAAATTTTAGAGCGCGAGTATAAAATTGATTTGAGCGCATGGATGAAAGAATTTGACAAAGTGTGTGTTTTTAA AGAGGGCGCGGGAGAAGAACAAAACAGAGAAATAAGCCCTGATGAAACAGCAAAGAACCCTCTTAAGGTTGAATTGGATT ACAGCATCAATCAGGCTAACACTTCATTGTCCAAAAAATCTTCCAAATGGAAACCCTTTGTTTTGGTTTTAGGGGTGGTT GTCATTGTTTTGGCGGTCGTTATCATTCAAAACAGCTCTTCTTTAAAAGAAGAAAGAGATCAAGAAAGCGCTATTAAATC CGGCTCTAAAAAGAGTTCTTTCAATAAAGCTAATCTTGCAGAAGAAAACAAGCCAGAGCCAACGCCTAAGCCAGAAGAAA AACAAGAAAAACCAAAAGAACAAGACAAGCAAGAAAAAGAAGCGATCAAAGAATATCCTAATACCATTTATATTATCCCT AAACGAGATATTTGGGTGGAAGTGATTGATTTAGATGAGAAAAAAAACTCTTTTCAAAAAGTTTTTAAAAAAAATTATTC TTTAGAGACCAAAAACCACCGCTTGTTGTTGCGTTTTGGGCATGGGTATCTTATCCTTAAAAACAATAATCAAGCACAAA ATTATAACGATAACAAAGCTAGGCGGTTTTTATACGAGCCGGCTAAAGGCTTGACGCTCATCAATGAGGCCCAATACAAA GAACTCCAGCAATGA
Upstream 100 bases:
>100_bases CACTATATTAAGCGTAAAAATGCGAAGAGATTTTGATTCGCTCAATGTGAGCGTGGCAGCAGGGATCTTAATGGATAAAA TCAACTAGGTGGTCAATTGA
Downstream 100 bases:
>100_bases AAAACCTTTTTTTAGCTTTTGTTGTTGGGGGAACGCTATTAAGCGCTGATGCTTTAAACGATAAGATTGAGAATTTAATG GGGGAGCGGGCTTATCATAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 324; Mature: 324
Protein sequence:
>324_residues MEQHKKSLENLDLTDVQNISKDISGAALEELSLKNLDKNLQILREIGIQEIYKATKIASKNINYILEKRYESLSRVRARG FIQILEREYKIDLSAWMKEFDKVCVFKEGAGEEQNREISPDETAKNPLKVELDYSINQANTSLSKKSSKWKPFVLVLGVV VIVLAVVIIQNSSSLKEERDQESAIKSGSKKSSFNKANLAEENKPEPTPKPEEKQEKPKEQDKQEKEAIKEYPNTIYIIP KRDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGYLILKNNNQAQNYNDNKARRFLYEPAKGLTLINEAQYK ELQQ
Sequences:
>Translated_324_residues MEQHKKSLENLDLTDVQNISKDISGAALEELSLKNLDKNLQILREIGIQEIYKATKIASKNINYILEKRYESLSRVRARG FIQILEREYKIDLSAWMKEFDKVCVFKEGAGEEQNREISPDETAKNPLKVELDYSINQANTSLSKKSSKWKPFVLVLGVV VIVLAVVIIQNSSSLKEERDQESAIKSGSKKSSFNKANLAEENKPEPTPKPEEKQEKPKEQDKQEKEAIKEYPNTIYIIP KRDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGYLILKNNNQAQNYNDNKARRFLYEPAKGLTLINEAQYK ELQQ >Mature_324_residues MEQHKKSLENLDLTDVQNISKDISGAALEELSLKNLDKNLQILREIGIQEIYKATKIASKNINYILEKRYESLSRVRARG FIQILEREYKIDLSAWMKEFDKVCVFKEGAGEEQNREISPDETAKNPLKVELDYSINQANTSLSKKSSKWKPFVLVLGVV VIVLAVVIIQNSSSLKEERDQESAIKSGSKKSSFNKANLAEENKPEPTPKPEEKQEKPKEQDKQEKEAIKEYPNTIYIIP KRDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGYLILKNNNQAQNYNDNKARRFLYEPAKGLTLINEAQYK ELQQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37563; Mature: 37563
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQHKKSLENLDLTDVQNISKDISGAALEELSLKNLDKNLQILREIGIQEIYKATKIASK CCHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHC NINYILEKRYESLSRVRARGFIQILEREYKIDLSAWMKEFDKVCVFKEGAGEEQNREISP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCCCCCCCCCCCCC DETAKNPLKVELDYSINQANTSLSKKSSKWKPFVLVLGVVVIVLAVVIIQNSSSLKEERD CCCCCCCEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH QESAIKSGSKKSSFNKANLAEENKPEPTPKPEEKQEKPKEQDKQEKEAIKEYPNTIYIIP HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCEEEEEE KRDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGYLILKNNNQAQNYNDNKA CCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCHHH RRFLYEPAKGLTLINEAQYKELQQ HHHHHCCCCCCEEHHHHHHHHHCC >Mature Secondary Structure MEQHKKSLENLDLTDVQNISKDISGAALEELSLKNLDKNLQILREIGIQEIYKATKIASK CCHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHC NINYILEKRYESLSRVRARGFIQILEREYKIDLSAWMKEFDKVCVFKEGAGEEQNREISP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCCCCCCCCCCCCC DETAKNPLKVELDYSINQANTSLSKKSSKWKPFVLVLGVVVIVLAVVIIQNSSSLKEERD CCCCCCCEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH QESAIKSGSKKSSFNKANLAEENKPEPTPKPEEKQEKPKEQDKQEKEAIKEYPNTIYIIP HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCEEEEEE KRDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGYLILKNNNQAQNYNDNKA CCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCHHH RRFLYEPAKGLTLINEAQYKELQQ HHHHHCCCCCCEEHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA