Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is 188527601

Identifier: 188527601

GI number: 188527601

Start: 798517

End: 799491

Strand: Reverse

Name: 188527601

Synonym: HPSH_04115

Alternate gene names: NA

Gene position: 799491-798517 (Counterclockwise)

Preceding gene: 188527602

Following gene: 188527600

Centisome position: 49.7

GC content: 34.77

Gene sequence:

>975_bases
ATGGAACAGCATAAAAAAAGTTTAGAAAATTTAGATCTTACTGATGTTCAAAACATTTCTAAAGATATTTCTGGTGCGGC
ATTGGAAGAATTATCGCTTAAAAATTTAGATAAAAATTTGCAAATTTTAAGAGAGATTGGCATACAAGAAATTTACAAAG
CGACTAAAATCGCTTCTAAAAATATCAACTACATATTAGAAAAGCGTTATGAGTCTTTATCAAGGGTGCGTGCTAGGGGC
TTTATACAAATTTTAGAGCGCGAGTATAAAATTGATTTGAGCGCATGGATGAAAGAATTTGACAAAGTGTGTGTTTTTAA
AGAGGGCGCGGGAGAAGAACAAAACAGAGAAATAAGCCCTGATGAAACAGCAAAGAACCCTCTTAAGGTTGAATTGGATT
ACAGCATCAATCAGGCTAACACTTCATTGTCCAAAAAATCTTCCAAATGGAAACCCTTTGTTTTGGTTTTAGGGGTGGTT
GTCATTGTTTTGGCGGTCGTTATCATTCAAAACAGCTCTTCTTTAAAAGAAGAAAGAGATCAAGAAAGCGCTATTAAATC
CGGCTCTAAAAAGAGTTCTTTCAATAAAGCTAATCTTGCAGAAGAAAACAAGCCAGAGCCAACGCCTAAGCCAGAAGAAA
AACAAGAAAAACCAAAAGAACAAGACAAGCAAGAAAAAGAAGCGATCAAAGAATATCCTAATACCATTTATATTATCCCT
AAACGAGATATTTGGGTGGAAGTGATTGATTTAGATGAGAAAAAAAACTCTTTTCAAAAAGTTTTTAAAAAAAATTATTC
TTTAGAGACCAAAAACCACCGCTTGTTGTTGCGTTTTGGGCATGGGTATCTTATCCTTAAAAACAATAATCAAGCACAAA
ATTATAACGATAACAAAGCTAGGCGGTTTTTATACGAGCCGGCTAAAGGCTTGACGCTCATCAATGAGGCCCAATACAAA
GAACTCCAGCAATGA

Upstream 100 bases:

>100_bases
CACTATATTAAGCGTAAAAATGCGAAGAGATTTTGATTCGCTCAATGTGAGCGTGGCAGCAGGGATCTTAATGGATAAAA
TCAACTAGGTGGTCAATTGA

Downstream 100 bases:

>100_bases
AAAACCTTTTTTTAGCTTTTGTTGTTGGGGGAACGCTATTAAGCGCTGATGCTTTAAACGATAAGATTGAGAATTTAATG
GGGGAGCGGGCTTATCATAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MEQHKKSLENLDLTDVQNISKDISGAALEELSLKNLDKNLQILREIGIQEIYKATKIASKNINYILEKRYESLSRVRARG
FIQILEREYKIDLSAWMKEFDKVCVFKEGAGEEQNREISPDETAKNPLKVELDYSINQANTSLSKKSSKWKPFVLVLGVV
VIVLAVVIIQNSSSLKEERDQESAIKSGSKKSSFNKANLAEENKPEPTPKPEEKQEKPKEQDKQEKEAIKEYPNTIYIIP
KRDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGYLILKNNNQAQNYNDNKARRFLYEPAKGLTLINEAQYK
ELQQ

Sequences:

>Translated_324_residues
MEQHKKSLENLDLTDVQNISKDISGAALEELSLKNLDKNLQILREIGIQEIYKATKIASKNINYILEKRYESLSRVRARG
FIQILEREYKIDLSAWMKEFDKVCVFKEGAGEEQNREISPDETAKNPLKVELDYSINQANTSLSKKSSKWKPFVLVLGVV
VIVLAVVIIQNSSSLKEERDQESAIKSGSKKSSFNKANLAEENKPEPTPKPEEKQEKPKEQDKQEKEAIKEYPNTIYIIP
KRDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGYLILKNNNQAQNYNDNKARRFLYEPAKGLTLINEAQYK
ELQQ
>Mature_324_residues
MEQHKKSLENLDLTDVQNISKDISGAALEELSLKNLDKNLQILREIGIQEIYKATKIASKNINYILEKRYESLSRVRARG
FIQILEREYKIDLSAWMKEFDKVCVFKEGAGEEQNREISPDETAKNPLKVELDYSINQANTSLSKKSSKWKPFVLVLGVV
VIVLAVVIIQNSSSLKEERDQESAIKSGSKKSSFNKANLAEENKPEPTPKPEEKQEKPKEQDKQEKEAIKEYPNTIYIIP
KRDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGYLILKNNNQAQNYNDNKARRFLYEPAKGLTLINEAQYK
ELQQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37563; Mature: 37563

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQHKKSLENLDLTDVQNISKDISGAALEELSLKNLDKNLQILREIGIQEIYKATKIASK
CCHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHC
NINYILEKRYESLSRVRARGFIQILEREYKIDLSAWMKEFDKVCVFKEGAGEEQNREISP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCCCCCCCCCCCCC
DETAKNPLKVELDYSINQANTSLSKKSSKWKPFVLVLGVVVIVLAVVIIQNSSSLKEERD
CCCCCCCEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QESAIKSGSKKSSFNKANLAEENKPEPTPKPEEKQEKPKEQDKQEKEAIKEYPNTIYIIP
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCEEEEEE
KRDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGYLILKNNNQAQNYNDNKA
CCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCHHH
RRFLYEPAKGLTLINEAQYKELQQ
HHHHHCCCCCCEEHHHHHHHHHCC
>Mature Secondary Structure
MEQHKKSLENLDLTDVQNISKDISGAALEELSLKNLDKNLQILREIGIQEIYKATKIASK
CCHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHC
NINYILEKRYESLSRVRARGFIQILEREYKIDLSAWMKEFDKVCVFKEGAGEEQNREISP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCCCCCCCCCCCCC
DETAKNPLKVELDYSINQANTSLSKKSSKWKPFVLVLGVVVIVLAVVIIQNSSSLKEERD
CCCCCCCEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
QESAIKSGSKKSSFNKANLAEENKPEPTPKPEEKQEKPKEQDKQEKEAIKEYPNTIYIIP
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCEEEEEE
KRDIWVEVIDLDEKKNSFQKVFKKNYSLETKNHRLLLRFGHGYLILKNNNQAQNYNDNKA
CCCEEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCHHH
RRFLYEPAKGLTLINEAQYKELQQ
HHHHHCCCCCCEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA