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The map label for this gene is hydD [H]

Identifier: 188527517

GI number: 188527517

Start: 708504

End: 709040

Strand: Reverse

Name: hydD [H]

Synonym: HPSH_03695

Alternate gene names: 188527517

Gene position: 709040-708504 (Counterclockwise)

Preceding gene: 188527518

Following gene: 188527516

Centisome position: 44.08

GC content: 42.64

Gene sequence:

>537_bases
ATGAGTCAAAAAATCCTAATTCTAGGCATTGGCAATATCCTTTTTGGCGATGAAGGGATTGGGGTGCATTTAGCCCACTA
CCTCAAAAGAAATTTTTCTTTTTTCCCTAGCGTGGATATTGTGGATGGGGGGACTATGGCGCAACAGCTCATTCCTTTAA
TCACTTCGTATGAAAAGGTTTTGATTTTAGATTGCGTGAGCGCTAAAGGCGTTGAGATAGGATCAGTCTATGCTTTTGAT
TTTAAGGACGCTCCTAAAGAAATCACATGGGCTGGGAGCGCGCATGAAGTGGAAATGCTACACACTTTAAGGCTCACGGA
GTTTTTAGGGGATTTGCCTAAAACTTTTATCGTGGGGCTTGTGCCTTTTGTGATAGGGAGCGAGACCACTTTCAAGCTTT
CAAGCGAAATTTTAAACGCTTTAGAAACAGCCTTAAAAGCCATAGAAACCCAACTCAACGCATGGGGAGTTCAAATGCAA
CGCACCGATCATATCGCCCTAGATTGTATCGCTGAACTCTCTTATAAGGGTTTTTGA

Upstream 100 bases:

>100_bases
TGTTTGTCCCTGTGCATGTTTATATGGTGTTTTTCCATTCTATCAGGTATGAAAGTTCGGGGGCGGATTCTATGATTAAT
GGCTATGGTTATACCAAAGA

Downstream 100 bases:

>100_bases
ATTGGCGTTTGTTTTTCTTTTTAAATGCGCTAATGAAGAAACAAGCCTGAATTTTACGCCCCTTTTAGAGCAAATGGCAT
GCAATTTGCAAGCGCGTTTT

Product: Hydrogenase expression/formation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MSQKILILGIGNILFGDEGIGVHLAHYLKRNFSFFPSVDIVDGGTMAQQLIPLITSYEKVLILDCVSAKGVEIGSVYAFD
FKDAPKEITWAGSAHEVEMLHTLRLTEFLGDLPKTFIVGLVPFVIGSETTFKLSSEILNALETALKAIETQLNAWGVQMQ
RTDHIALDCIAELSYKGF

Sequences:

>Translated_178_residues
MSQKILILGIGNILFGDEGIGVHLAHYLKRNFSFFPSVDIVDGGTMAQQLIPLITSYEKVLILDCVSAKGVEIGSVYAFD
FKDAPKEITWAGSAHEVEMLHTLRLTEFLGDLPKTFIVGLVPFVIGSETTFKLSSEILNALETALKAIETQLNAWGVQMQ
RTDHIALDCIAELSYKGF
>Mature_177_residues
SQKILILGIGNILFGDEGIGVHLAHYLKRNFSFFPSVDIVDGGTMAQQLIPLITSYEKVLILDCVSAKGVEIGSVYAFDF
KDAPKEITWAGSAHEVEMLHTLRLTEFLGDLPKTFIVGLVPFVIGSETTFKLSSEILNALETALKAIETQLNAWGVQMQR
TDHIALDCIAELSYKGF

Specific function: Protease Involved In The C-Terminal Processing Of Hybc, The Large Subunit Of Hydrogenase 2. Specifically Cleaves Off A 15 Amino Acid Peptide From The C Terminus Of The Precursor Of Hybc. [C]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase A31 family [H]

Homologues:

Organism=Escherichia coli, GI1789367, Length=156, Percent_Identity=28.8461538461538, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787209, Length=180, Percent_Identity=30.5555555555556, Blast_Score=70, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004419
- InterPro:   IPR000671 [H]

Pfam domain/function: PF01750 HycI [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 19578; Mature: 19447

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQKILILGIGNILFGDEGIGVHLAHYLKRNFSFFPSVDIVDGGTMAQQLIPLITSYEKV
CCCCEEEEEECCEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHCCCCE
LILDCVSAKGVEIGSVYAFDFKDAPKEITWAGSAHEVEMLHTLRLTEFLGDLPKTFIVGL
EEEEECCCCCCEECEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
VPFVIGSETTFKLSSEILNALETALKAIETQLNAWGVQMQRTDHIALDCIAELSYKGF
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQKILILGIGNILFGDEGIGVHLAHYLKRNFSFFPSVDIVDGGTMAQQLIPLITSYEKV
CCCEEEEEECCEEECCCCCHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHCCCCE
LILDCVSAKGVEIGSVYAFDFKDAPKEITWAGSAHEVEMLHTLRLTEFLGDLPKTFIVGL
EEEEECCCCCCEECEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHH
VPFVIGSETTFKLSSEILNALETALKAIETQLNAWGVQMQRTDHIALDCIAELSYKGF
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1587288; 9639603; 14500908 [H]