| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527201
Identifier: 188527201
GI number: 188527201
Start: 387709
End: 388563
Strand: Direct
Name: 188527201
Synonym: HPSH_02040
Alternate gene names: NA
Gene position: 387709-388563 (Clockwise)
Preceding gene: 188527200
Following gene: 188527202
Centisome position: 24.1
GC content: 35.44
Gene sequence:
>855_bases ATGTGTTCTAAAAAAATAAAAAATCTCATTTTATGCTTTGGTTTTATTTTAGGCTTGAATGCTGAAGAAAATACGGCTCA AGAGAATATGACTGAAGAAAATACCCCTAAAGACGCTCCCATTCTTTTGGAAGAAAAATGTGCCCAAACGCTAGAGTTTG AAGAAAACAAGGAAGCTAAAAAAAAGATTGATGAAAAAAGCCTGCTTGAAGAAATCCATAAGAAAAAACGCCAGCTTTAC ATGCTCAAAGGGGAATTGCATGAAAAAAATGAATCCATCTTATTCCAACAAATGGCTAAAAATAAGAGCGGTTTTTTTAT AGGCGTAATTCTTGGCGATATAGGCATTAACGCTCATTCTTACGCTCGATCTTATGAAAGCTTTGAACCTTCAAGCAACA TTCAAGCTTCTCCTTTGTTGTATGGATTAAGGAGCGGGTATCAAAAGTATTTTGCTAACGGGATTAGCGCCTTACGCTTT TATGGGGAATATTTAGGGGGAGCGATGAAAGGGTTTAAAAGCGATTCTTTAGCCTCTTATCAAACCGCAAGCTTGAATAT TGATCTATTGATGGATAAGCCTATTGACAAAGAAAAAAGGTTTGCGTTAGGGATATTTGGAGGCGTTGGAGTGGGGTGGA ATGGGATGTATCAAAATCTAAAAGAGATTAAAGGGTATTCACAGCCTAACGCTTTTGGGTTAGTGTTAAATTTAGGGGTG AGCATGACGCTTAACCTCAAACACCGCTTTGAATTAGCCTTAAAAATGCCTCCCTTAAAAGAAACTTCGCAAACCTTTTT ATATTATTTTAAAAGTACTAATATTTATTATATTAGTTACAACTATTTATTGTAA
Upstream 100 bases:
>100_bases ATTGAACTTGAATTTAAAATTTTAAATAATTTCCCTTTTTTGCAATCTAATTCTTCAAAAGAGACTTGGTGGGGAGCTAT AGCAAGCATTGGGTATCAAT
Downstream 100 bases:
>100_bases AGGCTAAAATGTTGAAATTTAAATATTGTTTGATTTATATCGTGCTCATACTGGGACTTCAAGCGACAGATTATGACAAT TTAGAAGAAGAAAACCAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 284; Mature: 284
Protein sequence:
>284_residues MCSKKIKNLILCFGFILGLNAEENTAQENMTEENTPKDAPILLEEKCAQTLEFEENKEAKKKIDEKSLLEEIHKKKRQLY MLKGELHEKNESILFQQMAKNKSGFFIGVILGDIGINAHSYARSYESFEPSSNIQASPLLYGLRSGYQKYFANGISALRF YGEYLGGAMKGFKSDSLASYQTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEIKGYSQPNAFGLVLNLGV SMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLL
Sequences:
>Translated_284_residues MCSKKIKNLILCFGFILGLNAEENTAQENMTEENTPKDAPILLEEKCAQTLEFEENKEAKKKIDEKSLLEEIHKKKRQLY MLKGELHEKNESILFQQMAKNKSGFFIGVILGDIGINAHSYARSYESFEPSSNIQASPLLYGLRSGYQKYFANGISALRF YGEYLGGAMKGFKSDSLASYQTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEIKGYSQPNAFGLVLNLGV SMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLL >Mature_284_residues MCSKKIKNLILCFGFILGLNAEENTAQENMTEENTPKDAPILLEEKCAQTLEFEENKEAKKKIDEKSLLEEIHKKKRQLY MLKGELHEKNESILFQQMAKNKSGFFIGVILGDIGINAHSYARSYESFEPSSNIQASPLLYGLRSGYQKYFANGISALRF YGEYLGGAMKGFKSDSLASYQTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEIKGYSQPNAFGLVLNLGV SMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32264; Mature: 32264
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCSKKIKNLILCFGFILGLNAEENTAQENMTEENTPKDAPILLEEKCAQTLEFEENKEAK CCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHH KKIDEKSLLEEIHKKKRQLYMLKGELHEKNESILFQQMAKNKSGFFIGVILGDIGINAHS HHCCHHHHHHHHHHHHHHEEEHCCHHCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCHHH YARSYESFEPSSNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSDSLASY HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE QTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEIKGYSQPNAFGLVLNLGV EEEEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCC SMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLL EEEEEECEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEEEECC >Mature Secondary Structure MCSKKIKNLILCFGFILGLNAEENTAQENMTEENTPKDAPILLEEKCAQTLEFEENKEAK CCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHH KKIDEKSLLEEIHKKKRQLYMLKGELHEKNESILFQQMAKNKSGFFIGVILGDIGINAHS HHCCHHHHHHHHHHHHHHEEEHCCHHCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCHHH YARSYESFEPSSNIQASPLLYGLRSGYQKYFANGISALRFYGEYLGGAMKGFKSDSLASY HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE QTASLNIDLLMDKPIDKEKRFALGIFGGVGVGWNGMYQNLKEIKGYSQPNAFGLVLNLGV EEEEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCC SMTLNLKHRFELALKMPPLKETSQTFLYYFKSTNIYYISYNYLL EEEEEECEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA