| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527200
Identifier: 188527200
GI number: 188527200
Start: 386997
End: 387719
Strand: Direct
Name: 188527200
Synonym: HPSH_02035
Alternate gene names: NA
Gene position: 386997-387719 (Clockwise)
Preceding gene: 188527191
Following gene: 188527201
Centisome position: 24.06
GC content: 37.9
Gene sequence:
>723_bases TTGGGTCTTAAAAAATATGTTATTTTATGGTTTTTAATGGGGTTTTATTCGGGATTGAACGCGCTTGATTATGACACCTT GGACCCAAAATACTACAAGTATATCAAGTATTATAAAGCCTATGAAGATAAAGAAGTTGAAGAATTGATCAAAGACTTAA AAAGGGCGAACGCTAAAAGCGGGCTTATTTTAGGGATCAATACCGGGTTTTTTTACAACCATGAAATCATGGTTAGAACT AATAGCTCTAGCATCACGGGGAATATTTTAAATTATTTGTTCGCTTATGGCTTGCGTTTTGGCTATCAAACTTTCAGGCC GTCGTTTTTTGCGCGCTTGGTCAAGCCAAATATCATTGGCAGGCGCATTTATATCCAATATTATGGAGGAGCTCCTAAAA AAGCGGGCTTTGGGAGCGTGGGGTTTCAATCGGTTATGCTGAATGGGGATTTTTTATTGGACATTCCCTTACCTTTTGTG GGAAAATACCTTTATATGGGGGGTTATATGGGTTTAGGTTTAGGGGTTGTAGCACATGGGGTGAATTATACGGCGGAATG GGGGATGTCTTTTAACGCAGGATTGGCTCTAACGGTATTAGAAAAAAACCGCATTGAACTTGAATTTAAAATTTTAAATA ATTTCCCTTTTTTGCAATCTAATTCTTCAAAAGAGACTTGGTGGGGAGCTATAGCAAGCATTGGGTATCAATATGTGTTC TAA
Upstream 100 bases:
>100_bases TGGGGTGGGTAAAATTTCACTCAATTTTAACCGGTCATTTTAATTATTTTAGTATAATTGGAAAAAACTTTTAACAAACA ATTCAAGGGATTTAGCGATT
Downstream 100 bases:
>100_bases AAAAATAAAAAATCTCATTTTATGCTTTGGTTTTATTTTAGGCTTGAATGCTGAAGAAAATACGGCTCAAGAGAATATGA CTGAAGAAAATACCCCTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 240; Mature: 239
Protein sequence:
>240_residues MGLKKYVILWFLMGFYSGLNALDYDTLDPKYYKYIKYYKAYEDKEVEELIKDLKRANAKSGLILGINTGFFYNHEIMVRT NSSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIGRRIYIQYYGGAPKKAGFGSVGFQSVMLNGDFLLDIPLPFV GKYLYMGGYMGLGLGVVAHGVNYTAEWGMSFNAGLALTVLEKNRIELEFKILNNFPFLQSNSSKETWWGAIASIGYQYVF
Sequences:
>Translated_240_residues MGLKKYVILWFLMGFYSGLNALDYDTLDPKYYKYIKYYKAYEDKEVEELIKDLKRANAKSGLILGINTGFFYNHEIMVRT NSSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIGRRIYIQYYGGAPKKAGFGSVGFQSVMLNGDFLLDIPLPFV GKYLYMGGYMGLGLGVVAHGVNYTAEWGMSFNAGLALTVLEKNRIELEFKILNNFPFLQSNSSKETWWGAIASIGYQYVF >Mature_239_residues GLKKYVILWFLMGFYSGLNALDYDTLDPKYYKYIKYYKAYEDKEVEELIKDLKRANAKSGLILGINTGFFYNHEIMVRTN SSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIGRRIYIQYYGGAPKKAGFGSVGFQSVMLNGDFLLDIPLPFVG KYLYMGGYMGLGLGVVAHGVNYTAEWGMSFNAGLALTVLEKNRIELEFKILNNFPFLQSNSSKETWWGAIASIGYQYVF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27397; Mature: 27266
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLKKYVILWFLMGFYSGLNALDYDTLDPKYYKYIKYYKAYEDKEVEELIKDLKRANAKS CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC GLILGINTGFFYNHEIMVRTNSSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIG CEEEEEECCEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCHHHHCHHHHHHHHCCCEEC RRIYIQYYGGAPKKAGFGSVGFQSVMLNGDFLLDIPLPFVGKYLYMGGYMGLGLGVVAHG EEEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEECHHHHHHHHHHCCHHHHHHHHHHCC VNYTAEWGMSFNAGLALTVLEKNRIELEFKILNNFPFLQSNSSKETWWGAIASIGYQYVF CCCEEECCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCEEECC >Mature Secondary Structure GLKKYVILWFLMGFYSGLNALDYDTLDPKYYKYIKYYKAYEDKEVEELIKDLKRANAKS CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC GLILGINTGFFYNHEIMVRTNSSSITGNILNYLFAYGLRFGYQTFRPSFFARLVKPNIIG CEEEEEECCEEECCEEEEEECCCCCHHHHHHHHHHHHHHHCHHHHCHHHHHHHHCCCEEC RRIYIQYYGGAPKKAGFGSVGFQSVMLNGDFLLDIPLPFVGKYLYMGGYMGLGLGVVAHG EEEEEEEECCCCCCCCCCCCCCEEEEECCCEEEEECHHHHHHHHHHCCHHHHHHHHHHCC VNYTAEWGMSFNAGLALTVLEKNRIELEFKILNNFPFLQSNSSKETWWGAIASIGYQYVF CCCEEECCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA