| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527202
Identifier: 188527202
GI number: 188527202
Start: 388575
End: 389516
Strand: Direct
Name: 188527202
Synonym: HPSH_02045
Alternate gene names: NA
Gene position: 388575-389516 (Clockwise)
Preceding gene: 188527201
Following gene: 188527203
Centisome position: 24.16
GC content: 36.94
Gene sequence:
>942_bases TTGAAATTTAAATATTGTTTGATTTATATCGTGCTCATACTGGGACTTCAAGCGACAGATTATGACAATTTAGAAGAAGA AAACCAACAATTAGACGAAAAAATAAACCATTTAAAACAACAGCTCACCGAAAAAGGGGTTTCGCCCCAAGAGATAAATA AGGATAAGTTTGAAGAAGAATATATTGATCGATCTTATCCTAAAATTTCTTCCAAGAAAAAAGAGAAATTGCTCAAATCT TTTTCCATAGCCGATGATAAGAGTGGGGTTTTTTTAGGGGGTGGGTATGCTTATGGGGAACTTAACTTGTCTTATCAAGG GGAAATGTTAGACAGATATGGCGCAAATGCCCCTAGTGCGTTTAAAAACAATATCAGCCTAAACGCTCCTGTTTCTATGA TTAGCGTTAAATTTGGGTATCAAAAATACTTTGTGCCTTATTTTGGGACACGATTTTATGGGGATTTATTGCTTGGGGGT GGGGTGTTAAAAGAGAATGCGCTCAAGCAACCTGTAGGCTCGTTTATTTATGTTTTAGGGGCTATGAATACGGATTTGTT GTTTGATATGCCTTTAGATTTTAAAACTAAAAAGCATTATTTAGGCGTTTATGCGGGTTTTGGGATAGGGCTTATGCTCT ATCAGGACAAGCCTAATCAAAACGGGAGGGATTTGGTGGTGGGGGGCTATTCAAGCCCTAATTTTTTATGGAAATCTTTG ATTGAAGTGGATTACACTTTTAATGTGGGCGTGAGTTTAACGCTTTATAGGAAACACCGCTTAGAGATTGGCACAAAATT ACCGATTAGCTATTTGAGAATGGGAGTGGAAGAGGGAGCGGTTTATCAAAATAAAGAAGATGATGAGCGTTTGTTGGTTT CGGCTAACAACCAGTTCAAGCGATCCAGTTTTTTATTAGTGAATTATGCGTTTATTTTTTAA
Upstream 100 bases:
>100_bases TGCCTCCCTTAAAAGAAACTTCGCAAACCTTTTTATATTATTTTAAAAGTACTAATATTTATTATATTAGTTACAACTAT TTATTGTAAAGGCTAAAATG
Downstream 100 bases:
>100_bases GGCTTGATCTTGGAGTTAAGGTTTAAAATTTTAGCGTTAGTCGTTTTAATTTTAGGGGGTTATTTGATTTTTAACGCTTT AATCACAAAACCCAAAGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 313; Mature: 313
Protein sequence:
>313_residues MKFKYCLIYIVLILGLQATDYDNLEEENQQLDEKINHLKQQLTEKGVSPQEINKDKFEEEYIDRSYPKISSKKKEKLLKS FSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSAFKNNISLNAPVSMISVKFGYQKYFVPYFGTRFYGDLLLGG GVLKENALKQPVGSFIYVLGAMNTDLLFDMPLDFKTKKHYLGVYAGFGIGLMLYQDKPNQNGRDLVVGGYSSPNFLWKSL IEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAVYQNKEDDERLLVSANNQFKRSSFLLVNYAFIF
Sequences:
>Translated_313_residues MKFKYCLIYIVLILGLQATDYDNLEEENQQLDEKINHLKQQLTEKGVSPQEINKDKFEEEYIDRSYPKISSKKKEKLLKS FSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSAFKNNISLNAPVSMISVKFGYQKYFVPYFGTRFYGDLLLGG GVLKENALKQPVGSFIYVLGAMNTDLLFDMPLDFKTKKHYLGVYAGFGIGLMLYQDKPNQNGRDLVVGGYSSPNFLWKSL IEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAVYQNKEDDERLLVSANNQFKRSSFLLVNYAFIF >Mature_313_residues MKFKYCLIYIVLILGLQATDYDNLEEENQQLDEKINHLKQQLTEKGVSPQEINKDKFEEEYIDRSYPKISSKKKEKLLKS FSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSAFKNNISLNAPVSMISVKFGYQKYFVPYFGTRFYGDLLLGG GVLKENALKQPVGSFIYVLGAMNTDLLFDMPLDFKTKKHYLGVYAGFGIGLMLYQDKPNQNGRDLVVGGYSSPNFLWKSL IEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAVYQNKEDDERLLVSANNQFKRSSFLLVNYAFIF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35662; Mature: 35662
Theoretical pI: Translated: 8.24; Mature: 8.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFKYCLIYIVLILGLQATDYDNLEEENQQLDEKINHLKQQLTEKGVSPQEINKDKFEEE CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHH YIDRSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSA HHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEEEEECCHHHHHCCCCCCCH FKNNISLNAPVSMISVKFGYQKYFVPYFGTRFYGDLLLGGGVLKENALKQPVGSFIYVLG HHCCCCCCCCEEEEEEEECCCEEEHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC AMNTDLLFDMPLDFKTKKHYLGVYAGFGIGLMLYQDKPNQNGRDLVVGGYSSPNFLWKSL CCCCCEEEECCCCCCCCHHEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHHH IEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAVYQNKEDDERLLVSANNQFK HHEEEEEECCEEEEEEEEEHHCCCCCCCHHHHHHCHHCCCCCCCCCCCCEEEEECCCCCC RSSFLLVNYAFIF CCEEEEEEEEEEC >Mature Secondary Structure MKFKYCLIYIVLILGLQATDYDNLEEENQQLDEKINHLKQQLTEKGVSPQEINKDKFEEE CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHH YIDRSYPKISSKKKEKLLKSFSIADDKSGVFLGGGYAYGELNLSYQGEMLDRYGANAPSA HHHCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCEEEEEEEEEECCHHHHHCCCCCCCH FKNNISLNAPVSMISVKFGYQKYFVPYFGTRFYGDLLLGGGVLKENALKQPVGSFIYVLG HHCCCCCCCCEEEEEEEECCCEEEHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC AMNTDLLFDMPLDFKTKKHYLGVYAGFGIGLMLYQDKPNQNGRDLVVGGYSSPNFLWKSL CCCCCEEEECCCCCCCCHHEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHHH IEVDYTFNVGVSLTLYRKHRLEIGTKLPISYLRMGVEEGAVYQNKEDDERLLVSANNQFK HHEEEEEECCEEEEEEEEEHHCCCCCCCHHHHHHCHHCCCCCCCCCCCCEEEEECCCCCC RSSFLLVNYAFIF CCEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA