| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527181
Identifier: 188527181
GI number: 188527181
Start: 371393
End: 372709
Strand: Direct
Name: 188527181
Synonym: HPSH_01940
Alternate gene names: NA
Gene position: 371393-372709 (Clockwise)
Preceding gene: 188527179
Following gene: 188527182
Centisome position: 23.09
GC content: 40.24
Gene sequence:
>1317_bases ATGAAAAAAATATGGCTTTTAGTGTGGGGCTTGTATTCTTTGGTGTTTGTGCATGCGATAGAAACGATAGAAAAAATCCC TACAAATGTAGATGATAAAGACAAAGCCCCCCACTTGTTGCTTTTAGCAGGGATTCAAGGCGATGAGCCTGGGGGGTTTA ATGCGGCTAATTTGTTTTTAATGCACTATAGCGTTTTAAAAGGCTTGGTTGAAGTGGTTCCGGTATTGAATAAGCCTTCC ATGTTGAGAAATCATAGGGGCTTGTATGGGGATATGAACCGCAAATTTGCCGCTTTAGACAAGAATGACCCTGAATACCC CACCATCCAAGAAATCAAATCCTTGATCGCAAAGCCCAATATAGATGCCGTCTTGCACTTGCATGATGGCGGTGGGTATT ATCGCCCTGTTTATGTTGATGCGATGCTCAATCCTAAGCGCTGGGGGAATTGCTTTATTATTGATCAAGATGAGATTAAA GGGGCAAAATTCCCTAACTTGCTTGCTTTTGCAAACAATACGATTGAGAGCATCAACGCCCATTTATTGCACCCCATTGA AGAGTATCATTTAAAAAACACGCGCACCGCACAAGGCGATACAGAAATGCAAAAAGCCCTAACTTTTTATGCGATCAATC AAAAAAAGAGCGCTTTTGCCAATGAGGCCAGCAAAGAACTCCCTTTAGCATCAAGGGTGTTTTACCATTTGCAAGCCATT GAGGGCTTACTCAATCAGCTCAATATCCCTTTTAAGCGCGATTTTGAGCTTAACCCTAGCAGCGTGCATGCCCTAATCAA TGATAAAAGCTTGTGGGCAAAAATCAGCTCTCTGCCTAAAATGCCCCTTTTTAACTTGCGCCCCAAACTCAATCATTTCC CCTTACCCTACAACACTAAAATCCCACAAATCCCCATAGAGAGCAACGCTTACATTGTAGGGCTAGTCAAAAATAAACAA GAAGTGTTTTTAAAATACGGCAACAAGCTCATGACACGATTATCGCCCTTTTATATAGAGTTTGATCATTCTTTAGAAGA AGTGAAAATGCAAATTGATAATAAGGATCAAATGGTTAAAATAGGGAGCGTGGTTGAAGTGAAAGAGAGTTTTTATATCC ATGCTATGGACAATATCCGCGCGAATGTGATTGGCTTTAGCGTCTCTAATGAAAGCAAGCCTAACGAAGCGGGTTATACG ATTAAATTTAAAGATTTTCAAAAACGCTTTTCATTAGACAAGCAAGAAAGGATCTATCGCATAGAATTTTATAAAAACAA CGCGTTTAGCGGGATGATCTTAGTGAAATTTGTGTAG
Upstream 100 bases:
>100_bases AGCATTTTTCGTTCCTTTTTATGAAAACTTTAAAAACACTCTTAAAAAGGTTTTTAGGTATAATTAGCGATCTTTTAGTT TCAAATAGTAGAGAGATTGG
Downstream 100 bases:
>100_bases GAACGGAATAAGCCTTACCAAAAGATCTCATAGCGTTTTAAGGCAATGCCTAGTATAACATGATAACCGCAAATCAAGGA TAGTTATGCCAGACATTAGA
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein; Succinylglutamate Desuccinylase/Aspartoacylase; Tat Pathway Signal Sequence Domain Protein; Purine Nucleoside Phosphorylase; Secreted Protein
Number of amino acids: Translated: 438; Mature: 438
Protein sequence:
>438_residues MKKIWLLVWGLYSLVFVHAIETIEKIPTNVDDKDKAPHLLLLAGIQGDEPGGFNAANLFLMHYSVLKGLVEVVPVLNKPS MLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPNIDAVLHLHDGGGYYRPVYVDAMLNPKRWGNCFIIDQDEIK GAKFPNLLAFANNTIESINAHLLHPIEEYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLASRVFYHLQAI EGLLNQLNIPFKRDFELNPSSVHALINDKSLWAKISSLPKMPLFNLRPKLNHFPLPYNTKIPQIPIESNAYIVGLVKNKQ EVFLKYGNKLMTRLSPFYIEFDHSLEEVKMQIDNKDQMVKIGSVVEVKESFYIHAMDNIRANVIGFSVSNESKPNEAGYT IKFKDFQKRFSLDKQERIYRIEFYKNNAFSGMILVKFV
Sequences:
>Translated_438_residues MKKIWLLVWGLYSLVFVHAIETIEKIPTNVDDKDKAPHLLLLAGIQGDEPGGFNAANLFLMHYSVLKGLVEVVPVLNKPS MLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPNIDAVLHLHDGGGYYRPVYVDAMLNPKRWGNCFIIDQDEIK GAKFPNLLAFANNTIESINAHLLHPIEEYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLASRVFYHLQAI EGLLNQLNIPFKRDFELNPSSVHALINDKSLWAKISSLPKMPLFNLRPKLNHFPLPYNTKIPQIPIESNAYIVGLVKNKQ EVFLKYGNKLMTRLSPFYIEFDHSLEEVKMQIDNKDQMVKIGSVVEVKESFYIHAMDNIRANVIGFSVSNESKPNEAGYT IKFKDFQKRFSLDKQERIYRIEFYKNNAFSGMILVKFV >Mature_438_residues MKKIWLLVWGLYSLVFVHAIETIEKIPTNVDDKDKAPHLLLLAGIQGDEPGGFNAANLFLMHYSVLKGLVEVVPVLNKPS MLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPNIDAVLHLHDGGGYYRPVYVDAMLNPKRWGNCFIIDQDEIK GAKFPNLLAFANNTIESINAHLLHPIEEYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLASRVFYHLQAI EGLLNQLNIPFKRDFELNPSSVHALINDKSLWAKISSLPKMPLFNLRPKLNHFPLPYNTKIPQIPIESNAYIVGLVKNKQ EVFLKYGNKLMTRLSPFYIEFDHSLEEVKMQIDNKDQMVKIGSVVEVKESFYIHAMDNIRANVIGFSVSNESKPNEAGYT IKFKDFQKRFSLDKQERIYRIEFYKNNAFSGMILVKFV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50187; Mature: 50187
Theoretical pI: Translated: 9.47; Mature: 9.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIWLLVWGLYSLVFVHAIETIEKIPTNVDDKDKAPHLLLLAGIQGDEPGGFNAANLFL CCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHH MHYSVLKGLVEVVPVLNKPSMLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPN HHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCC IDAVLHLHDGGGYYRPVYVDAMLNPKRWGNCFIIDQDEIKGAKFPNLLAFANNTIESINA CCEEEEEECCCCEEEEEEEEEEECCCCCCCEEEEEHHHCCCCCCCCEEEHHCCHHHHHHH HLLHPIEEYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLASRVFYHLQAI HHCCCHHHHHCCCCCCCCCCHHHHHHEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHH EGLLNQLNIPFKRDFELNPSSVHALINDKSLWAKISSLPKMPLFNLRPKLNHFPLPYNTK HHHHHHCCCCCCCCCCCCHHHEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC IPQIPIESNAYIVGLVKNKQEVFLKYGNKLMTRLSPFYIEFDHSLEEVKMQIDNKDQMVK CCCCEECCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCEEE IGSVVEVKESFYIHAMDNIRANVIGFSVSNESKPNEAGYTIKFKDFQKRFSLDKQERIYR ECCEEEECCCEEEEEECCCEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHCCCHHHCEEE IEFYKNNAFSGMILVKFV EEEEECCCCCCEEEEEEC >Mature Secondary Structure MKKIWLLVWGLYSLVFVHAIETIEKIPTNVDDKDKAPHLLLLAGIQGDEPGGFNAANLFL CCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHH MHYSVLKGLVEVVPVLNKPSMLRNHRGLYGDMNRKFAALDKNDPEYPTIQEIKSLIAKPN HHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCCC IDAVLHLHDGGGYYRPVYVDAMLNPKRWGNCFIIDQDEIKGAKFPNLLAFANNTIESINA CCEEEEEECCCCEEEEEEEEEEECCCCCCCEEEEEHHHCCCCCCCCEEEHHCCHHHHHHH HLLHPIEEYHLKNTRTAQGDTEMQKALTFYAINQKKSAFANEASKELPLASRVFYHLQAI HHCCCHHHHHCCCCCCCCCCHHHHHHEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHH EGLLNQLNIPFKRDFELNPSSVHALINDKSLWAKISSLPKMPLFNLRPKLNHFPLPYNTK HHHHHHCCCCCCCCCCCCHHHEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC IPQIPIESNAYIVGLVKNKQEVFLKYGNKLMTRLSPFYIEFDHSLEEVKMQIDNKDQMVK CCCCEECCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCEEE IGSVVEVKESFYIHAMDNIRANVIGFSVSNESKPNEAGYTIKFKDFQKRFSLDKQERIYR ECCEEEECCCEEEEEECCCEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHCCCHHHCEEE IEFYKNNAFSGMILVKFV EEEEECCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA