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The map label for this gene is cspA [H]

Identifier: 187935705

GI number: 187935705

Start: 1575299

End: 1575508

Strand: Reverse

Name: cspA [H]

Synonym: CLL_A1515

Alternate gene names: 187935705

Gene position: 1575508-1575299 (Counterclockwise)

Preceding gene: 187934934

Following gene: 187935145

Centisome position: 41.46

GC content: 34.76

Gene sequence:

>210_bases
ATGGCTAGTAGAACAGGCATAGTTAAATGGTTCAATGCTGAAAAAGGGTATGGTTTTATTTCATGTGATGAAGGAGATGA
CGTTTTTGCACATCACTCACAAATTAAAGAAAATGGTCCTGAAAAGGACTTACATGAGGGTGAAAGTGTAACCTTTGATA
TACAAGATGGTGAAAAAGGTCCAATGGCGACAAATATACAAAAATTATAA

Upstream 100 bases:

>100_bases
TGATACTTTGCAAATGGATAAACTATTTCTATATAAAATAATAAAAATAAATTTTAAGCAAATAATAATAGTGAAAACTT
TGTTAAAAGAGAGATAATTT

Downstream 100 bases:

>100_bases
ACAGATTTAAAGCTGATTCTATTTTAAATACTCTATTTTTAAATAGAATATTTAGATTATATTTATAAAAATAAATTCAA
TTGTTTATTTTTATTTATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MASRTGIVKWFNAEKGYGFISCDEGDDVFAHHSQIKENGPEKDLHEGESVTFDIQDGEKGPMATNIQKL

Sequences:

>Translated_69_residues
MASRTGIVKWFNAEKGYGFISCDEGDDVFAHHSQIKENGPEKDLHEGESVTFDIQDGEKGPMATNIQKL
>Mature_68_residues
ASRTGIVKWFNAEKGYGFISCDEGDDVFAHHSQIKENGPEKDLHEGESVTFDIQDGEKGPMATNIQKL

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI156415990, Length=65, Percent_Identity=52.3076923076923, Blast_Score=65, Evalue=8e-12,
Organism=Homo sapiens, GI34098946, Length=65, Percent_Identity=50.7692307692308, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI224586884, Length=65, Percent_Identity=50.7692307692308, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=56.0606060606061, Blast_Score=73, Evalue=3e-15,
Organism=Escherichia coli, GI1788126, Length=70, Percent_Identity=52.8571428571429, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=55.5555555555556, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=48.4848484848485, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1786841, Length=70, Percent_Identity=50, Blast_Score=65, Evalue=7e-13,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=50, Blast_Score=62, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7655; Mature: 7524

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASRTGIVKWFNAEKGYGFISCDEGDDVFAHHSQIKENGPEKDLHEGESVTFDIQDGEKG
CCCCCCEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC
PMATNIQKL
CCCCCCCCC
>Mature Secondary Structure 
ASRTGIVKWFNAEKGYGFISCDEGDDVFAHHSQIKENGPEKDLHEGESVTFDIQDGEKG
CCCCCEEEEECCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCC
PMATNIQKL
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]