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The map label for this gene is yciR [C]

Identifier: 187935484

GI number: 187935484

Start: 3319404

End: 3321410

Strand: Reverse

Name: yciR [C]

Synonym: CLL_A3194

Alternate gene names: 187935484

Gene position: 3321410-3319404 (Counterclockwise)

Preceding gene: 187934786

Following gene: 187933103

Centisome position: 87.4

GC content: 23.67

Gene sequence:

>2007_bases
ATGAATATAAAAGTAAAGTCTATTATTTTTGCAGTATTTTTAGCTACAATTCCTGTTTTAATTACAATGAATATATACAT
TACAAAATTTAGTGAAAGATCAATTGAATTAATTAAAGAAAATGTAATAATAGCAGCAAAAGATCAATCGACTCATTTAG
AAGATTTTTTTGATCAAAGATTAATTAATCTTAATGTTATTTCTAATATGCCAATAACTCATGATTTTCTAGATGATTTC
AATAATAATATATTAGATAAATCTGAGGAAATGAAATTTAGAAGGAAAATTATATTTGATATTTTAAACTTAAGGCAGCA
GGAACAAGCATATTTAGTTAAAACATCATTGATTAGCAAAGATAATACAATAATAGCATCAAGTGACGGTAATAGTGTTG
GCAATAAAGCTGTTTTTGATAAAAATGATATAATAAAATTTAATAATAAAGAAATTGTTATTACAGATATTATAGAAAAT
GAGAAGTTTAATAATGGAGAAAAAAGTGCAATTATAGCAATACCAATATTTTTTGAGGACGAGTATCAAGGTATTATAGA
AAGTGTTATTAATATGCAGTACTTTGAAAAAGTTGTTAATGAGGTACACTTTTTTAATACTGGTGAAATAATAGTTATGG
ATAGTAGAGGAACTGTAGCTGCAACTATAAGTGATTACTTAAATGAAAATATATATAATATAGATAAACCTAATACTTTA
GAAGAAGAATGGAGAAATATAGACTTTAAAAATAATTCAAGTGGATTAATTGAATATAGCATTGATGAAATTGAAAAAAT
AGGTTATTTTTATAAAATACCTAATTCTAATTGGGTAGTTTTGAGTGTAGTTGAGTGGTCAGAGTTTAAAGACCCTCTTA
ATGAAAGTATTAATATTATGTTTTTTATGTCTATAATAATTTCAGCAGTTGTATCTATAACATATATCCTTATTATTAAT
TTCTTCTCTAAACCTATTTATGGATTGTTAAATTCAATAAGAGAAATAAAAAAAGGAAACTATAAAAGTAGATTTATATA
TAATATAAAAGATGAATTTGGAGAAATATCTCAAGCATTTAATGAATTAATGGATGAGATTTTAAAGAATAAGATGCAAC
TTAAATTAAGTGAAGAAAGTTATAGAGTTATAATGGAGCAAACTGATGATATTATTTTTCAGTGGGATATTAATAGTGAT
ATAATAAGTTACTCTGATAATTGGAATCATAAATTTAATTACAAACTTAATTCCCAAGGTAAGGATTTAAGGACATTAAA
TATCATTTATGAAGAAGATAGAGAAAAGTTTAATTCAATAATTGCTGAAATAAAAAACACTAATGAATATAGGGAATGTG
AAGTTAGATTAAGAAAAAATTATAATGGTGAGTATATATGGTGTAAAGTTAGAATTAATTTAATTTTAGATGATAATAAT
AAACCAATAAAAGCAATAGGACTAATAACAGATATTGATAATGAAAAAAGAGAAAATGAAAAATTAATATTTAAAGCAGA
AAGAGATAGTTTAACTGAAATTTATAATAAAATAACTGCCCAAAATATGATTGAAGAATATATTAACAAAAGCAAAAAGG
ATGATAGACATGCATTGTTTATCATTGATATTGACGATTTTAAATCTATAAATGATAATTTAGGCCATTTAACAGGAGAT
TCTGTTTTAAAAGATATTTCAATTAAAATAACAGAAATATTTAATGAAAATTCAATAATAGGAAGAATTGGTGGAGATGA
ATTTATTGTATTTTTAAAGAGTATTCAATCAGATGAGTTTGTTTGTGAAAAAGCTAATGAATTAGTTAGTGGATTTAGAG
AAAATTATACAGGCGAAGATGGGGTATATAAAGTATCAGGAAGTATTGGAATTGCTATGTACCCTAAAGGTGGTTTGAAC
TTTGAACAATTATTTTTAAGTGCCGATAAAGCCTTGTATTTTGCTAAAAAACAAGGAAAAGATACGTATTATATATCTAA
TGTATAG

Upstream 100 bases:

>100_bases
ATATAACAATTTTAATCTTGAATATGGCAAGGTCCAAATATGAGTTAAAAATATGTTTATATTAAAAGAAAAAGCATTGT
AAAAATTATTGAGGTGAAAC

Downstream 100 bases:

>100_bases
TTAAATTAACATAAAAGAACTATAATTAATATGAGAATACAGGAGGTAACATAATGATAAAATTAATAGTTTCTGATATG
GATGGAACACTTTTAAATAG

Product: signaling protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 668; Mature: 668

Protein sequence:

>668_residues
MNIKVKSIIFAVFLATIPVLITMNIYITKFSERSIELIKENVIIAAKDQSTHLEDFFDQRLINLNVISNMPITHDFLDDF
NNNILDKSEEMKFRRKIIFDILNLRQQEQAYLVKTSLISKDNTIIASSDGNSVGNKAVFDKNDIIKFNNKEIVITDIIEN
EKFNNGEKSAIIAIPIFFEDEYQGIIESVINMQYFEKVVNEVHFFNTGEIIVMDSRGTVAATISDYLNENIYNIDKPNTL
EEEWRNIDFKNNSSGLIEYSIDEIEKIGYFYKIPNSNWVVLSVVEWSEFKDPLNESINIMFFMSIIISAVVSITYILIIN
FFSKPIYGLLNSIREIKKGNYKSRFIYNIKDEFGEISQAFNELMDEILKNKMQLKLSEESYRVIMEQTDDIIFQWDINSD
IISYSDNWNHKFNYKLNSQGKDLRTLNIIYEEDREKFNSIIAEIKNTNEYRECEVRLRKNYNGEYIWCKVRINLILDDNN
KPIKAIGLITDIDNEKRENEKLIFKAERDSLTEIYNKITAQNMIEEYINKSKKDDRHALFIIDIDDFKSINDNLGHLTGD
SVLKDISIKITEIFNENSIIGRIGGDEFIVFLKSIQSDEFVCEKANELVSGFRENYTGEDGVYKVSGSIGIAMYPKGGLN
FEQLFLSADKALYFAKKQGKDTYYISNV

Sequences:

>Translated_668_residues
MNIKVKSIIFAVFLATIPVLITMNIYITKFSERSIELIKENVIIAAKDQSTHLEDFFDQRLINLNVISNMPITHDFLDDF
NNNILDKSEEMKFRRKIIFDILNLRQQEQAYLVKTSLISKDNTIIASSDGNSVGNKAVFDKNDIIKFNNKEIVITDIIEN
EKFNNGEKSAIIAIPIFFEDEYQGIIESVINMQYFEKVVNEVHFFNTGEIIVMDSRGTVAATISDYLNENIYNIDKPNTL
EEEWRNIDFKNNSSGLIEYSIDEIEKIGYFYKIPNSNWVVLSVVEWSEFKDPLNESINIMFFMSIIISAVVSITYILIIN
FFSKPIYGLLNSIREIKKGNYKSRFIYNIKDEFGEISQAFNELMDEILKNKMQLKLSEESYRVIMEQTDDIIFQWDINSD
IISYSDNWNHKFNYKLNSQGKDLRTLNIIYEEDREKFNSIIAEIKNTNEYRECEVRLRKNYNGEYIWCKVRINLILDDNN
KPIKAIGLITDIDNEKRENEKLIFKAERDSLTEIYNKITAQNMIEEYINKSKKDDRHALFIIDIDDFKSINDNLGHLTGD
SVLKDISIKITEIFNENSIIGRIGGDEFIVFLKSIQSDEFVCEKANELVSGFRENYTGEDGVYKVSGSIGIAMYPKGGLN
FEQLFLSADKALYFAKKQGKDTYYISNV
>Mature_668_residues
MNIKVKSIIFAVFLATIPVLITMNIYITKFSERSIELIKENVIIAAKDQSTHLEDFFDQRLINLNVISNMPITHDFLDDF
NNNILDKSEEMKFRRKIIFDILNLRQQEQAYLVKTSLISKDNTIIASSDGNSVGNKAVFDKNDIIKFNNKEIVITDIIEN
EKFNNGEKSAIIAIPIFFEDEYQGIIESVINMQYFEKVVNEVHFFNTGEIIVMDSRGTVAATISDYLNENIYNIDKPNTL
EEEWRNIDFKNNSSGLIEYSIDEIEKIGYFYKIPNSNWVVLSVVEWSEFKDPLNESINIMFFMSIIISAVVSITYILIIN
FFSKPIYGLLNSIREIKKGNYKSRFIYNIKDEFGEISQAFNELMDEILKNKMQLKLSEESYRVIMEQTDDIIFQWDINSD
IISYSDNWNHKFNYKLNSQGKDLRTLNIIYEEDREKFNSIIAEIKNTNEYRECEVRLRKNYNGEYIWCKVRINLILDDNN
KPIKAIGLITDIDNEKRENEKLIFKAERDSLTEIYNKITAQNMIEEYINKSKKDDRHALFIIDIDDFKSINDNLGHLTGD
SVLKDISIKITEIFNENSIIGRIGGDEFIVFLKSIQSDEFVCEKANELVSGFRENYTGEDGVYKVSGSIGIAMYPKGGLN
FEQLFLSADKALYFAKKQGKDTYYISNV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=33.8983050847458, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1788381, Length=190, Percent_Identity=26.8421052631579, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787262, Length=176, Percent_Identity=32.9545454545455, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=30.2857142857143, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=30.8571428571429, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI145693134, Length=196, Percent_Identity=30.1020408163265, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1787802, Length=169, Percent_Identity=30.7692307692308, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=32.9268292682927, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=28.2485875706215, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87081977, Length=179, Percent_Identity=26.8156424581006, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788085, Length=186, Percent_Identity=29.5698924731183, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 77667; Mature: 77667

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS50885 HAMP ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKVKSIIFAVFLATIPVLITMNIYITKFSERSIELIKENVIIAAKDQSTHLEDFFDQR
CCEEHHHHHHHHHHHHHHHHEEEEEEEEEECCHHHHHHHCCEEEEECCCCCHHHHHHHHH
LINLNVISNMPITHDFLDDFNNNILDKSEEMKFRRKIIFDILNLRQQEQAYLVKTSLISK
EEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHEEHHHHCCC
DNTIIASSDGNSVGNKAVFDKNDIIKFNNKEIVITDIIENEKFNNGEKSAIIAIPIFFED
CCEEEEECCCCCCCCCCEECCCCEEEECCCEEEEEEEECCCCCCCCCCCEEEEEEEEECC
EYQGIIESVINMQYFEKVVNEVHFFNTGEIIVMDSRGTVAATISDYLNENIYNIDKPNTL
HHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCEEEEHHHHHCCCCCCCCCCCCH
EEEWRNIDFKNNSSGLIEYSIDEIEKIGYFYKIPNSNWVVLSVVEWSEFKDPLNESINIM
HHHHCCCCCCCCCCCEEEEEHHHHHHCCCEEECCCCCEEEEEEECCHHHHCCCCCCCHHH
FFMSIIISAVVSITYILIINFFSKPIYGLLNSIREIKKGNYKSRFIYNIKDEFGEISQAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHH
NELMDEILKNKMQLKLSEESYRVIMEQTDDIIFQWDINSDIISYSDNWNHKFNYKLNSQG
HHHHHHHHCCHHEEEECCCHHHHHEECCCCEEEEEECCCCEEEECCCCCEEEEEEECCCC
KDLRTLNIIYEEDREKFNSIIAEIKNTNEYRECEVRLRKNYNGEYIWCKVRINLILDDNN
CCEEEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEEEEEEEEECCC
KPIKAIGLITDIDNEKRENEKLIFKAERDSLTEIYNKITAQNMIEEYINKSKKDDRHALF
CCEEEEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
IIDIDDFKSINDNLGHLTGDSVLKDISIKITEIFNENSIIGRIGGDEFIVFLKSIQSDEF
EEECCCCCCCCCCCCCCCHHHHHHHHEEEEEEEECCCCEEEEECCCCEEEEEHHCCCCHH
VCEKANELVSGFRENYTGEDGVYKVSGSIGIAMYPKGGLNFEQLFLSADKALYFAKKQGK
HHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHCHHEEEEHHCCC
DTYYISNV
CEEEEECC
>Mature Secondary Structure
MNIKVKSIIFAVFLATIPVLITMNIYITKFSERSIELIKENVIIAAKDQSTHLEDFFDQR
CCEEHHHHHHHHHHHHHHHHEEEEEEEEEECCHHHHHHHCCEEEEECCCCCHHHHHHHHH
LINLNVISNMPITHDFLDDFNNNILDKSEEMKFRRKIIFDILNLRQQEQAYLVKTSLISK
EEEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHEEHHHHCCC
DNTIIASSDGNSVGNKAVFDKNDIIKFNNKEIVITDIIENEKFNNGEKSAIIAIPIFFED
CCEEEEECCCCCCCCCCEECCCCEEEECCCEEEEEEEECCCCCCCCCCCEEEEEEEEECC
EYQGIIESVINMQYFEKVVNEVHFFNTGEIIVMDSRGTVAATISDYLNENIYNIDKPNTL
HHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCEEEEHHHHHCCCCCCCCCCCCH
EEEWRNIDFKNNSSGLIEYSIDEIEKIGYFYKIPNSNWVVLSVVEWSEFKDPLNESINIM
HHHHCCCCCCCCCCCEEEEEHHHHHHCCCEEECCCCCEEEEEEECCHHHHCCCCCCCHHH
FFMSIIISAVVSITYILIINFFSKPIYGLLNSIREIKKGNYKSRFIYNIKDEFGEISQAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHH
NELMDEILKNKMQLKLSEESYRVIMEQTDDIIFQWDINSDIISYSDNWNHKFNYKLNSQG
HHHHHHHHCCHHEEEECCCHHHHHEECCCCEEEEEECCCCEEEECCCCCEEEEEEECCCC
KDLRTLNIIYEEDREKFNSIIAEIKNTNEYRECEVRLRKNYNGEYIWCKVRINLILDDNN
CCEEEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEEEEEEEEECCC
KPIKAIGLITDIDNEKRENEKLIFKAERDSLTEIYNKITAQNMIEEYINKSKKDDRHALF
CCEEEEEEEECCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
IIDIDDFKSINDNLGHLTGDSVLKDISIKITEIFNENSIIGRIGGDEFIVFLKSIQSDEF
EEECCCCCCCCCCCCCCCHHHHHHHHEEEEEEEECCCCEEEEECCCCEEEEEHHCCCCHH
VCEKANELVSGFRENYTGEDGVYKVSGSIGIAMYPKGGLNFEQLFLSADKALYFAKKQGK
HHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHCHHEEEEHHCCC
DTYYISNV
CEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]