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The map label for this gene is tapB [H]

Identifier: 187935462

GI number: 187935462

Start: 3471242

End: 3472930

Strand: Reverse

Name: tapB [H]

Synonym: CLL_A3302

Alternate gene names: 187935462

Gene position: 3472930-3471242 (Counterclockwise)

Preceding gene: 187934585

Following gene: 187933106

Centisome position: 91.39

GC content: 27.59

Gene sequence:

>1689_bases
ATGGCTATAGAAAAGAAAAGATTAGGGAATATCCTTATAAATGCAGGTAAGATAACTAGTTATCAATTGCAAGAAGCATT
AAAATCTCAAAAAATTCTTGGTAAAAAATTGGGCGAAATATTAGTAGATAGTAATATCATTACAGAAGAAGAGATAATAG
AATCTATTGAACAACAAACAGGAATAAAGAAGGTAGATTTAAATACAATAAACTTTGATAATAAATCAATAGCTATAATA
CCTAAGAATTTATGTAACAAATATTCACTAATACCTTTTGGATTTGATAATAATAAAATAAAAGTAGCTATGTCAGATCC
TCTTAATATTTATGCAATAGATGATGTTGTGATTTCAACAGGTTTTGAAATAGAAGCCTTCATATCTAAAAAGAATGACA
TAAAAAAATTCATAGAAATATATTATAGTAGTCAACAAGTTAGTATGGCTGCACAACAATTAGCTAAAGAAAGTTCAGAG
TCAAAGAAAAATAATATTGTAAATATTGAAGAGATTGATGATGTAAAGAATGCACCAGTTGTAAAAATGGTTGAATATCT
GTTCAAAAATTCAATAGAAATGAATGCATCAGATATACATATAGAACCATTTGAAAATGAAATAAGAATAAGATATAGAA
TAGATGGACAATTGCAACCAATAAATATTTTAAATATAGATAGTTTAGGTCCTTTAATAACAAGAATAAAAATTCTTGCA
GGACTTAATATAGCTGAAAAAAGAATACCACAGGATGGTAGGATAATAGTTAGAATCGGAGAAAAAGATGTAGATTTAAG
AGTATCAGTATTACCAGTAGTATATGGAGAAAAGGTAGTTATAAGAATACTAAATACATCTAACTATAATGTAAGCAAGG
ATAAATTAGGTATAAATGAAAAGAACTTAAAAAAAATAGATAAAATAATTTCAAATCCATATGGAATAGTATTAGTTACA
GGTCCAACTGGTAGTGGTAAATCAACAACATTATACAGCATTTTAAGTGAATTAAATTCTAATAATGTAAATATAGTTAC
AGTAGAAGATCCTGTTGAATATACGCTTCCAGGTGTTAATCAAGTTAATGTAAATACAAAAGCAGGACTTACATTTGCAA
GTGGACTTAGAAGTATATTAAGGCAAGATCCAGATATAGTTATGATAGGTGAAATAAGAGATAATGAAACAGCTGAAATA
GCTATAAAAGCTGCTATTACAGGACATTTAGTATTAAGTACACTTCATACAAATGATGCACCATCATCAATAATAAGGCT
TATAGATATGGGCATAAAACCTTATTTAGTTTCTACCTCAGTTGTTGGAATATTAGCTCAAAGACTGGTAAGAAAAGTAT
GTGACAAGTGCAAAGTATATTATGAAGCTAGTAAATATGAAAAAGAAATATTGGGTATAAATAAAAATGAAGATTTAAAA
CTATATAAGGCATCAGGATGTGGCTACTGTAATAATACAGGTTATTCAGGTAGAATTGGTGTTTATGAAGTTATGGAAAT
GACAAGAAGTCATAGAGAAGCTATAAATGCTGGAGCTAATTCTGATATATTAAAAGACATCTCATTAAAAAATGGAATGA
CAACATTAGGTATGGAATGTAGGGAATTAGTTGTTAAAGGGGTAACTACTATAACAGAACTTGCAACAATAAGTTTATTG
AAAGATTAA

Upstream 100 bases:

>100_bases
AATAATAAATGCTTATTTAAAAATGGTAGGTATAATATAAAAATTAGTATATGTGGGAGAGGTTGTAACATAAGAAATAA
AAGAGAGTGGTGAGTATTTA

Downstream 100 bases:

>100_bases
TTAAATCATATATTTTATAAAGATTAAATAAAATTAAAACAAACATAAATTAAAGAAGAAGTTGAACTTATAGAAGATTA
TTTTATTATAAAGGGGATGA

Product: type IV pilus assembly protein TapB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 562; Mature: 561

Protein sequence:

>562_residues
MAIEKKRLGNILINAGKITSYQLQEALKSQKILGKKLGEILVDSNIITEEEIIESIEQQTGIKKVDLNTINFDNKSIAII
PKNLCNKYSLIPFGFDNNKIKVAMSDPLNIYAIDDVVISTGFEIEAFISKKNDIKKFIEIYYSSQQVSMAAQQLAKESSE
SKKNNIVNIEEIDDVKNAPVVKMVEYLFKNSIEMNASDIHIEPFENEIRIRYRIDGQLQPINILNIDSLGPLITRIKILA
GLNIAEKRIPQDGRIIVRIGEKDVDLRVSVLPVVYGEKVVIRILNTSNYNVSKDKLGINEKNLKKIDKIISNPYGIVLVT
GPTGSGKSTTLYSILSELNSNNVNIVTVEDPVEYTLPGVNQVNVNTKAGLTFASGLRSILRQDPDIVMIGEIRDNETAEI
AIKAAITGHLVLSTLHTNDAPSSIIRLIDMGIKPYLVSTSVVGILAQRLVRKVCDKCKVYYEASKYEKEILGINKNEDLK
LYKASGCGYCNNTGYSGRIGVYEVMEMTRSHREAINAGANSDILKDISLKNGMTTLGMECRELVVKGVTTITELATISLL
KD

Sequences:

>Translated_562_residues
MAIEKKRLGNILINAGKITSYQLQEALKSQKILGKKLGEILVDSNIITEEEIIESIEQQTGIKKVDLNTINFDNKSIAII
PKNLCNKYSLIPFGFDNNKIKVAMSDPLNIYAIDDVVISTGFEIEAFISKKNDIKKFIEIYYSSQQVSMAAQQLAKESSE
SKKNNIVNIEEIDDVKNAPVVKMVEYLFKNSIEMNASDIHIEPFENEIRIRYRIDGQLQPINILNIDSLGPLITRIKILA
GLNIAEKRIPQDGRIIVRIGEKDVDLRVSVLPVVYGEKVVIRILNTSNYNVSKDKLGINEKNLKKIDKIISNPYGIVLVT
GPTGSGKSTTLYSILSELNSNNVNIVTVEDPVEYTLPGVNQVNVNTKAGLTFASGLRSILRQDPDIVMIGEIRDNETAEI
AIKAAITGHLVLSTLHTNDAPSSIIRLIDMGIKPYLVSTSVVGILAQRLVRKVCDKCKVYYEASKYEKEILGINKNEDLK
LYKASGCGYCNNTGYSGRIGVYEVMEMTRSHREAINAGANSDILKDISLKNGMTTLGMECRELVVKGVTTITELATISLL
KD
>Mature_561_residues
AIEKKRLGNILINAGKITSYQLQEALKSQKILGKKLGEILVDSNIITEEEIIESIEQQTGIKKVDLNTINFDNKSIAIIP
KNLCNKYSLIPFGFDNNKIKVAMSDPLNIYAIDDVVISTGFEIEAFISKKNDIKKFIEIYYSSQQVSMAAQQLAKESSES
KKNNIVNIEEIDDVKNAPVVKMVEYLFKNSIEMNASDIHIEPFENEIRIRYRIDGQLQPINILNIDSLGPLITRIKILAG
LNIAEKRIPQDGRIIVRIGEKDVDLRVSVLPVVYGEKVVIRILNTSNYNVSKDKLGINEKNLKKIDKIISNPYGIVLVTG
PTGSGKSTTLYSILSELNSNNVNIVTVEDPVEYTLPGVNQVNVNTKAGLTFASGLRSILRQDPDIVMIGEIRDNETAEIA
IKAAITGHLVLSTLHTNDAPSSIIRLIDMGIKPYLVSTSVVGILAQRLVRKVCDKCKVYYEASKYEKEILGINKNEDLKL
YKASGCGYCNNTGYSGRIGVYEVMEMTRSHREAINAGANSDILKDISLKNGMTTLGMECRELVVKGVTTITELATISLLK
D

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG2804

COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1789723, Length=350, Percent_Identity=48.2857142857143, Blast_Score=368, Evalue=1e-103,
Organism=Escherichia coli, GI1786296, Length=406, Percent_Identity=41.871921182266, Blast_Score=331, Evalue=1e-91,
Organism=Escherichia coli, GI87082188, Length=253, Percent_Identity=33.596837944664, Blast_Score=127, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013374
- InterPro:   IPR007831
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E; PF05157 GSPII_E_N [H]

EC number: NA

Molecular weight: Translated: 62332; Mature: 62201

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIEKKRLGNILINAGKITSYQLQEALKSQKILGKKLGEILVDSNIITEEEIIESIEQQT
CCCCHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
GIKKVDLNTINFDNKSIAIIPKNLCNKYSLIPFGFDNNKIKVAMSDPLNIYAIDDVVIST
CCEEEEEEEEECCCCEEEEEEHHHCCCCEEEEECCCCCEEEEEECCCEEEEEECCEEEEC
GFEIEAFISKKNDIKKFIEIYYSSQQVSMAAQQLAKESSESKKNNIVNIEEIDDVKNAPV
CCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCCCCCCH
VKMVEYLFKNSIEMNASDIHIEPFENEIRIRYRIDGQLQPINILNIDSLGPLITRIKILA
HHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCEECCEEEEECCCCCHHHHHHHHHH
GLNIAEKRIPQDGRIIVRIGEKDVDLRVSVLPVVYGEKVVIRILNTSNYNVSKDKLGINE
CCCHHHHHCCCCCEEEEEECCCCCCEEEEEEEEEECCEEEEEEEECCCCCCCHHHCCCCH
KNLKKIDKIISNPYGIVLVTGPTGSGKSTTLYSILSELNSNNVNIVTVEDPVEYTLPGVN
HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEECCCCC
QVNVNTKAGLTFASGLRSILRQDPDIVMIGEIRDNETAEIAIKAAITGHLVLSTLHTNDA
EEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEEEEEEEEEECCCCC
PSSIIRLIDMGIKPYLVSTSVVGILAQRLVRKVCDKCKVYYEASKYEKEILGINKNEDLK
HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCCCCEE
LYKASGCGYCNNTGYSGRIGVYEVMEMTRSHREAINAGANSDILKDISLKNGMTTLGMEC
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHH
RELVVKGVTTITELATISLLKD
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AIEKKRLGNILINAGKITSYQLQEALKSQKILGKKLGEILVDSNIITEEEIIESIEQQT
CCCHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
GIKKVDLNTINFDNKSIAIIPKNLCNKYSLIPFGFDNNKIKVAMSDPLNIYAIDDVVIST
CCEEEEEEEEECCCCEEEEEEHHHCCCCEEEEECCCCCEEEEEECCCEEEEEECCEEEEC
GFEIEAFISKKNDIKKFIEIYYSSQQVSMAAQQLAKESSESKKNNIVNIEEIDDVKNAPV
CCEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEHHHHCCCCCCCH
VKMVEYLFKNSIEMNASDIHIEPFENEIRIRYRIDGQLQPINILNIDSLGPLITRIKILA
HHHHHHHHHCCCCCCCCEEEEEECCCCEEEEEEECCEECCEEEEECCCCCHHHHHHHHHH
GLNIAEKRIPQDGRIIVRIGEKDVDLRVSVLPVVYGEKVVIRILNTSNYNVSKDKLGINE
CCCHHHHHCCCCCEEEEEECCCCCCEEEEEEEEEECCEEEEEEEECCCCCCCHHHCCCCH
KNLKKIDKIISNPYGIVLVTGPTGSGKSTTLYSILSELNSNNVNIVTVEDPVEYTLPGVN
HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCEEECCCCC
QVNVNTKAGLTFASGLRSILRQDPDIVMIGEIRDNETAEIAIKAAITGHLVLSTLHTNDA
EEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEEEEEEEEEEECCCCC
PSSIIRLIDMGIKPYLVSTSVVGILAQRLVRKVCDKCKVYYEASKYEKEILGINKNEDLK
HHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCCCCCEE
LYKASGCGYCNNTGYSGRIGVYEVMEMTRSHREAINAGANSDILKDISLKNGMTTLGMEC
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHH
RELVVKGVTTITELATISLLKD
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]