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The map label for this gene is tapC [H]

Identifier: 187933106

GI number: 187933106

Start: 3469932

End: 3471134

Strand: Reverse

Name: tapC [H]

Synonym: CLL_A3301

Alternate gene names: 187933106

Gene position: 3471134-3469932 (Counterclockwise)

Preceding gene: 187935462

Following gene: 187933890

Centisome position: 91.34

GC content: 28.43

Gene sequence:

>1203_bases
GTGCCTAACTTTAAATATAGAGCAATGAATATGGATGGAGAAAAAATTCATGGAAATCATGAAGCTGATTCTAAAGGAGA
GGTCATAGAATTTATATCATCTAATGGATATTACCCTTTAATGGTGGAAGAAATAATTGAAAGTAAACAAATTGAATTTA
AATTTAATAATAAAGTAAAACTTAAAGATCTTTCAATATTTTGTAGACAATTTTATACAATGCTAGATGCAGGAGTACCA
ATACTTACCTGTTTAAATATATTGACTAGTCAAACTACCAATAAAAAACTACAAGAAACCTTAAAAGAGGTAGAGGATGA
TGTAGAAAAAGGTGGAGTATTATCTGATGCCATGAGAAAATATACAGAAGTTTTTCCAGGACTTTTAGTAAGCTTAGTTG
CAGCTGGAGAAGCAAGTGGTAACTTAGATAGCATAATGCTTAGAATGGCTAATCATTATGAAAAAGAAAATAAGGTAAGC
AATAAAGTAAGAAATGCAATGATATATCCAATAATATTAGGTTTAGTAGCAATTACAGCAGTTGTATTTATATTAACATA
TGTTATGCCAACATTTACTGACTTGTTTATTGAAAGTGGATTAAATTTACCTTGGAGTACTAAATTTTTACTTTGGTCAA
GTGCCTCATTAAAAGCACATTGGTTTATGATTTTACTTGCAATAGTAGGAATTACTATTGCAATAAAATATTACTTAAAA
ACAGAACAAGGCTCAATTGCAGCAAGCAAATTGAAGCTTAAGCTACCAGTCATTAGAAGACTTAATGAAATGATTATAGT
ATCCAGATTTACAAGAACTTTATCAACATTACTTTCAAGTGGATTACCATTAGTACAAGCTTTAGATATAGTTATTGGAG
TTATTGATAATAAAATAGCTGAGGATGCAATATTAAAAGTTAAAGAGAAAGTGGTAAGAGGAGAAAGCTTAAATTCTTCA
TTAAGGGAAACAGAAATTTTTCCACAAATGTTATATTCAATGATTAAAATTGGCGAAGAAACAGGATCTTTAGATGATAT
TTTAAATAAAACCGCTGATTTTTATGATGAAGAATTGGAATCAACAATTCAAACTACAGTTGCATTAATGGAACCAGCAT
TAATAGTAATAATGGGTCTTATAATCGGATTTATAATAATTTCAATAATGATTCCGATGTTTGATAGTTATAATCAAATT
TAA

Upstream 100 bases:

>100_bases
ATATATTTTATAAAGATTAAATAAAATTAAAACAAACATAAATTAAAGAAGAAGTTGAACTTATAGAAGATTATTTTATT
ATAAAGGGGATGAATAAGCT

Downstream 100 bases:

>100_bases
TAATTTAGTTAGTTTTAAAGGTGTTTTAATATTATAGTATATAGCTCATTGGACTGAGAAATTTACTTTAAGAATACTAA
AATAAAGATTAGTCTAATTA

Product: type II secretion system protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MPNFKYRAMNMDGEKIHGNHEADSKGEVIEFISSNGYYPLMVEEIIESKQIEFKFNNKVKLKDLSIFCRQFYTMLDAGVP
ILTCLNILTSQTTNKKLQETLKEVEDDVEKGGVLSDAMRKYTEVFPGLLVSLVAAGEASGNLDSIMLRMANHYEKENKVS
NKVRNAMIYPIILGLVAITAVVFILTYVMPTFTDLFIESGLNLPWSTKFLLWSSASLKAHWFMILLAIVGITIAIKYYLK
TEQGSIAASKLKLKLPVIRRLNEMIIVSRFTRTLSTLLSSGLPLVQALDIVIGVIDNKIAEDAILKVKEKVVRGESLNSS
LRETEIFPQMLYSMIKIGEETGSLDDILNKTADFYDEELESTIQTTVALMEPALIVIMGLIIGFIIISIMIPMFDSYNQI

Sequences:

>Translated_400_residues
MPNFKYRAMNMDGEKIHGNHEADSKGEVIEFISSNGYYPLMVEEIIESKQIEFKFNNKVKLKDLSIFCRQFYTMLDAGVP
ILTCLNILTSQTTNKKLQETLKEVEDDVEKGGVLSDAMRKYTEVFPGLLVSLVAAGEASGNLDSIMLRMANHYEKENKVS
NKVRNAMIYPIILGLVAITAVVFILTYVMPTFTDLFIESGLNLPWSTKFLLWSSASLKAHWFMILLAIVGITIAIKYYLK
TEQGSIAASKLKLKLPVIRRLNEMIIVSRFTRTLSTLLSSGLPLVQALDIVIGVIDNKIAEDAILKVKEKVVRGESLNSS
LRETEIFPQMLYSMIKIGEETGSLDDILNKTADFYDEELESTIQTTVALMEPALIVIMGLIIGFIIISIMIPMFDSYNQI
>Mature_399_residues
PNFKYRAMNMDGEKIHGNHEADSKGEVIEFISSNGYYPLMVEEIIESKQIEFKFNNKVKLKDLSIFCRQFYTMLDAGVPI
LTCLNILTSQTTNKKLQETLKEVEDDVEKGGVLSDAMRKYTEVFPGLLVSLVAAGEASGNLDSIMLRMANHYEKENKVSN
KVRNAMIYPIILGLVAITAVVFILTYVMPTFTDLFIESGLNLPWSTKFLLWSSASLKAHWFMILLAIVGITIAIKYYLKT
EQGSIAASKLKLKLPVIRRLNEMIIVSRFTRTLSTLLSSGLPLVQALDIVIGVIDNKIAEDAILKVKEKVVRGESLNSSL
RETEIFPQMLYSMIKIGEETGSLDDILNKTADFYDEELESTIQTTVALMEPALIVIMGLIIGFIIISIMIPMFDSYNQI

Specific function: Involved in the translocation of the type IV pilin [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=394, Percent_Identity=30.7106598984772, Blast_Score=204, Evalue=7e-54,
Organism=Escherichia coli, GI1786295, Length=395, Percent_Identity=25.8227848101266, Blast_Score=133, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44926; Mature: 44795

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNFKYRAMNMDGEKIHGNHEADSKGEVIEFISSNGYYPLMVEEIIESKQIEFKFNNKVK
CCCCCEEEECCCCCEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCEEE
LKDLSIFCRQFYTMLDAGVPILTCLNILTSQTTNKKLQETLKEVEDDVEKGGVLSDAMRK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
YTEVFPGLLVSLVAAGEASGNLDSIMLRMANHYEKENKVSNKVRNAMIYPIILGLVAITA
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVFILTYVMPTFTDLFIESGLNLPWSTKFLLWSSASLKAHWFMILLAIVGITIAIKYYLK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
TEQGSIAASKLKLKLPVIRRLNEMIIVSRFTRTLSTLLSSGLPLVQALDIVIGVIDNKIA
CCCCCHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
EDAILKVKEKVVRGESLNSSLRETEIFPQMLYSMIKIGEETGSLDDILNKTADFYDEELE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
STIQTTVALMEPALIVIMGLIIGFIIISIMIPMFDSYNQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PNFKYRAMNMDGEKIHGNHEADSKGEVIEFISSNGYYPLMVEEIIESKQIEFKFNNKVK
CCCCEEEECCCCCEECCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCEEEEECCEEE
LKDLSIFCRQFYTMLDAGVPILTCLNILTSQTTNKKLQETLKEVEDDVEKGGVLSDAMRK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
YTEVFPGLLVSLVAAGEASGNLDSIMLRMANHYEKENKVSNKVRNAMIYPIILGLVAITA
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVFILTYVMPTFTDLFIESGLNLPWSTKFLLWSSASLKAHWFMILLAIVGITIAIKYYLK
HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
TEQGSIAASKLKLKLPVIRRLNEMIIVSRFTRTLSTLLSSGLPLVQALDIVIGVIDNKIA
CCCCCHHHHHHHEECHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
EDAILKVKEKVVRGESLNSSLRETEIFPQMLYSMIKIGEETGSLDDILNKTADFYDEELE
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
STIQTTVALMEPALIVIMGLIIGFIIISIMIPMFDSYNQI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8820654 [H]