| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is yhgE [H]
Identifier: 187934660
GI number: 187934660
Start: 2751750
End: 2754032
Strand: Reverse
Name: yhgE [H]
Synonym: CLL_A2640
Alternate gene names: 187934660
Gene position: 2754032-2751750 (Counterclockwise)
Preceding gene: 187935391
Following gene: 187933777
Centisome position: 72.47
GC content: 28.03
Gene sequence:
>2283_bases ATGAAAAATATATTTAGAATTTACAAAAGAGATATAGTTACAATAGCAACTAATTGGGCAGCGTTAATCATGATTATAGT GCTTATAATAGTACCATCTTTATATTCATTAATAAATATAAAAGCATCATGGGATCCGTATGGGGCTACAAATGGAATTA AAATAGCTATAATCAATGAAGATAAAGGAACTGTATTTAAAGAGAAAGATATAAATTTAGGTGAAGAGTTAATAGAGAAG TTAGAAGAAAATGATAAAATGGGTTGGTCATTTGTTGATAAAGAAACTGGAAAGAAGGGGTTAATAGAAGAAAAATATTA TGCCACAATTGAAATTCCAGAAAATTTTTCTAAAGACCTTACTACATTAGTTGAAAAAGATGTTGAAAAGCCTAAATTAA TATATACAGTAAATGAAAAGAAAAATACAATAGCTCCTAAAATGACTGATGCAGGTGTAAAAACATTAAAAGGTCAACTT GATGATAATATAACGAGAACTGTAACAGGAGCAATGTTTAGAGCTTGTAATGAAGTGGGAATAGATATTCAAAATAATAG AGAACATCTTAGAAGAATAATTGATGGAATATATGAATTAGATGAAAATATGCCAGATATAAAGGAGCTATTAGATGATT CAATAGAAGGAACTGTCAATGCTTCAGAATTAATAAAGAAGTCAGAGGAAGTTATACCTGTAGTATATGATAGTATAGAT GCAAGTAAAGAACTCATAAATAATAGTCATTACTACTTAGAAGAAATAGAAGGCAATCTTTCAGATTTATCTCCATTAAT AGAAGAAGAACTTGTAAATGGTGAAAGTTCATTAGATGCTTTAGGTGTAACTTTAGCTAATCTTGATGAAAAAGTATTAC CGGATGTTGCAAGAAAGACTTTTATAGCTTTAACTGATTCTTCAGAAAAGTTACAAAAGATAGTTAAGACTGCAAAATAT GATTTAAAGACAATAAAATCTCATATAGATAAAATAAGTAATATTGAAATAAATTTAAAGCCAATTGAAGAAGGGGAAGC AAAAGATACAAAGGAAATCAAGCAAGATAATAAAGAATTAAAATACTTAAAAAGTGTTCAAAAGGATTTGAAGGATATAA GCAGAAAAATTTCAGAAACTATTGATAAGTTAGATTTGATTTATGACAGACTTGATGTAGTGATTGAAAGATCAAAAGAA GAAGTAGAAAAAATAGATACTGATGGTGTAGACATTCAAGCATTAACTGATACAAGAAAAATATTAGATGATGTTCATTC ATTAGTAGCTACTTTAGTTGATAATTATGATTCAGAACTAGTTCCAACTATTGAATATGGATTTAAATCTATAAGAGAAA TATCAGATAGTGGACTAGTATTATTAGAACAAGGAATAAGTATATTACCTGATGTAGAGAATTTATTAGGAGACTTTACT AAAATAACTAATTTATCAAATGAACAATTAGTTAAATTACAAGATGATTTTCCTAAGATACAAGATCAAGTTCATAAATT AGCACATAAACTTAAGGCTGTAGATGAAAAAGATCAAATAGATGAATTATTAGATATGATAACTAATGAGTGGGATTCTC AAAGTATGTTTATGACTAGTCCAGTTGATATAGAAGACAATAGATTATTTCCATGGCCAAATTATGGATCAACAGCGACA CCTTTTTATACTGTTTTATGCTTATGGGTTGGAGGTTTATTATCTTCAGCATTATTATCATTAGAAGTACATGAATTTGA TGATGGAACTGTGATTAAACCATATCAAATTTATTTAGGAAAATTATTGATGTTTTTATCACTTGCAGTATGTCAAGCAC TAGTTGCGAGTGTAGGTGCACTTTTGATTTTAGGAAGTTATTCATTACATCCAGTAATGTATGTTTTTTATTCCATATTT GTAAGTTTAGTATTCATGACTGTGATATATACTGCTGGAAGCTTACTAGATGATGTAGGAAAAGCTATTATAGTAGTAAT ACTAGTATTACAAATTGCAGGAACTAGTGGAAACTTCCCAATAGAAGTTGCACCAGTATTATTTCAAAAAATATATCCAT ATTTGCCATTTACATATGCTATAAATGGTATGAGGCAAATAATGGCTGGGATAGTATATCCTATATTAATTAAAGATACT ATAATATTAAGTGTATATATGGTAGGAGCATTAATTTGTGGCTTATCATTAAAGGGACTATTAAATAAAACAACAACTAA ACTTATGGGTAAGTTGGCTGAAAGTGATATATTAAGACATTAG
Upstream 100 bases:
>100_bases TTATAGGATTAACACTTAGAAAAACAATGAATAAAAAGAATGAAAAGTTTGTTGAAAAATTAAAAGAAAGCACAATAATG AACGGTTGAGGTAATTAAAT
Downstream 100 bases:
>100_bases AATAAATTAATAAGAGATGAAAAACTAATTATTAGTTTTTTATCTCTTATTTATATGCTAAATTATAAATAACTACAGTT GGAAAAAGACAAAAAATAAT
Product: hypothetical protein
Products: NA
Alternate protein names: ORFB [H]
Number of amino acids: Translated: 760; Mature: 760
Protein sequence:
>760_residues MKNIFRIYKRDIVTIATNWAALIMIIVLIIVPSLYSLINIKASWDPYGATNGIKIAIINEDKGTVFKEKDINLGEELIEK LEENDKMGWSFVDKETGKKGLIEEKYYATIEIPENFSKDLTTLVEKDVEKPKLIYTVNEKKNTIAPKMTDAGVKTLKGQL DDNITRTVTGAMFRACNEVGIDIQNNREHLRRIIDGIYELDENMPDIKELLDDSIEGTVNASELIKKSEEVIPVVYDSID ASKELINNSHYYLEEIEGNLSDLSPLIEEELVNGESSLDALGVTLANLDEKVLPDVARKTFIALTDSSEKLQKIVKTAKY DLKTIKSHIDKISNIEINLKPIEEGEAKDTKEIKQDNKELKYLKSVQKDLKDISRKISETIDKLDLIYDRLDVVIERSKE EVEKIDTDGVDIQALTDTRKILDDVHSLVATLVDNYDSELVPTIEYGFKSIREISDSGLVLLEQGISILPDVENLLGDFT KITNLSNEQLVKLQDDFPKIQDQVHKLAHKLKAVDEKDQIDELLDMITNEWDSQSMFMTSPVDIEDNRLFPWPNYGSTAT PFYTVLCLWVGGLLSSALLSLEVHEFDDGTVIKPYQIYLGKLLMFLSLAVCQALVASVGALLILGSYSLHPVMYVFYSIF VSLVFMTVIYTAGSLLDDVGKAIIVVILVLQIAGTSGNFPIEVAPVLFQKIYPYLPFTYAINGMRQIMAGIVYPILIKDT IILSVYMVGALICGLSLKGLLNKTTTKLMGKLAESDILRH
Sequences:
>Translated_760_residues MKNIFRIYKRDIVTIATNWAALIMIIVLIIVPSLYSLINIKASWDPYGATNGIKIAIINEDKGTVFKEKDINLGEELIEK LEENDKMGWSFVDKETGKKGLIEEKYYATIEIPENFSKDLTTLVEKDVEKPKLIYTVNEKKNTIAPKMTDAGVKTLKGQL DDNITRTVTGAMFRACNEVGIDIQNNREHLRRIIDGIYELDENMPDIKELLDDSIEGTVNASELIKKSEEVIPVVYDSID ASKELINNSHYYLEEIEGNLSDLSPLIEEELVNGESSLDALGVTLANLDEKVLPDVARKTFIALTDSSEKLQKIVKTAKY DLKTIKSHIDKISNIEINLKPIEEGEAKDTKEIKQDNKELKYLKSVQKDLKDISRKISETIDKLDLIYDRLDVVIERSKE EVEKIDTDGVDIQALTDTRKILDDVHSLVATLVDNYDSELVPTIEYGFKSIREISDSGLVLLEQGISILPDVENLLGDFT KITNLSNEQLVKLQDDFPKIQDQVHKLAHKLKAVDEKDQIDELLDMITNEWDSQSMFMTSPVDIEDNRLFPWPNYGSTAT PFYTVLCLWVGGLLSSALLSLEVHEFDDGTVIKPYQIYLGKLLMFLSLAVCQALVASVGALLILGSYSLHPVMYVFYSIF VSLVFMTVIYTAGSLLDDVGKAIIVVILVLQIAGTSGNFPIEVAPVLFQKIYPYLPFTYAINGMRQIMAGIVYPILIKDT IILSVYMVGALICGLSLKGLLNKTTTKLMGKLAESDILRH >Mature_760_residues MKNIFRIYKRDIVTIATNWAALIMIIVLIIVPSLYSLINIKASWDPYGATNGIKIAIINEDKGTVFKEKDINLGEELIEK LEENDKMGWSFVDKETGKKGLIEEKYYATIEIPENFSKDLTTLVEKDVEKPKLIYTVNEKKNTIAPKMTDAGVKTLKGQL DDNITRTVTGAMFRACNEVGIDIQNNREHLRRIIDGIYELDENMPDIKELLDDSIEGTVNASELIKKSEEVIPVVYDSID ASKELINNSHYYLEEIEGNLSDLSPLIEEELVNGESSLDALGVTLANLDEKVLPDVARKTFIALTDSSEKLQKIVKTAKY DLKTIKSHIDKISNIEINLKPIEEGEAKDTKEIKQDNKELKYLKSVQKDLKDISRKISETIDKLDLIYDRLDVVIERSKE EVEKIDTDGVDIQALTDTRKILDDVHSLVATLVDNYDSELVPTIEYGFKSIREISDSGLVLLEQGISILPDVENLLGDFT KITNLSNEQLVKLQDDFPKIQDQVHKLAHKLKAVDEKDQIDELLDMITNEWDSQSMFMTSPVDIEDNRLFPWPNYGSTAT PFYTVLCLWVGGLLSSALLSLEVHEFDDGTVIKPYQIYLGKLLMFLSLAVCQALVASVGALLILGSYSLHPVMYVFYSIF VSLVFMTVIYTAGSLLDDVGKAIIVVILVLQIAGTSGNFPIEVAPVLFQKIYPYLPFTYAINGMRQIMAGIVYPILIKDT IILSVYMVGALICGLSLKGLLNKTTTKLMGKLAESDILRH
Specific function: Unknown
COG id: COG1511
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To L.lactis phage infection protein (PIP) [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013525 - InterPro: IPR022703 - InterPro: IPR017501 - InterPro: IPR017500 [H]
Pfam domain/function: PF01061 ABC2_membrane; PF12051 DUF3533 [H]
EC number: NA
Molecular weight: Translated: 85346; Mature: 85346
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNIFRIYKRDIVTIATNWAALIMIIVLIIVPSLYSLINIKASWDPYGATNGIKIAIINE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEC DKGTVFKEKDINLGEELIEKLEENDKMGWSFVDKETGKKGLIEEKYYATIEIPENFSKDL CCCCEEECCCCCCHHHHHHHHHHCCCCCCEECCHHCCCCCCCCCCCEEEEECCCCHHHHH TTLVEKDVEKPKLIYTVNEKKNTIAPKMTDAGVKTLKGQLDDNITRTVTGAMFRACNEVG HHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC IDIQNNREHLRRIIDGIYELDENMPDIKELLDDSIEGTVNASELIKKSEEVIPVVYDSID CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHCHH ASKELINNSHYYLEEIEGNLSDLSPLIEEELVNGESSLDALGVTLANLDEKVLPDVARKT HHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHH FIALTDSSEKLQKIVKTAKYDLKTIKSHIDKISNIEINLKPIEEGEAKDTKEIKQDNKEL EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHH KYLKSVQKDLKDISRKISETIDKLDLIYDRLDVVIERSKEEVEKIDTDGVDIQALTDTRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHH ILDDVHSLVATLVDNYDSELVPTIEYGFKSIREISDSGLVLLEQGISILPDVENLLGDFT HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCHHHHHHHHH KITNLSNEQLVKLQDDFPKIQDQVHKLAHKLKAVDEKDQIDELLDMITNEWDSQSMFMTS HHHCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEC PVDIEDNRLFPWPNYGSTATPFYTVLCLWVGGLLSSALLSLEVHEFDDGTVIKPYQIYLG CCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEECHHHHHHH KLLMFLSLAVCQALVASVGALLILGSYSLHPVMYVFYSIFVSLVFMTVIYTAGSLLDDVG HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KAIIVVILVLQIAGTSGNFPIEVAPVLFQKIYPYLPFTYAINGMRQIMAGIVYPILIKDT HHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH IILSVYMVGALICGLSLKGLLNKTTTKLMGKLAESDILRH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MKNIFRIYKRDIVTIATNWAALIMIIVLIIVPSLYSLINIKASWDPYGATNGIKIAIINE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEC DKGTVFKEKDINLGEELIEKLEENDKMGWSFVDKETGKKGLIEEKYYATIEIPENFSKDL CCCCEEECCCCCCHHHHHHHHHHCCCCCCEECCHHCCCCCCCCCCCEEEEECCCCHHHHH TTLVEKDVEKPKLIYTVNEKKNTIAPKMTDAGVKTLKGQLDDNITRTVTGAMFRACNEVG HHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC IDIQNNREHLRRIIDGIYELDENMPDIKELLDDSIEGTVNASELIKKSEEVIPVVYDSID CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHCHH ASKELINNSHYYLEEIEGNLSDLSPLIEEELVNGESSLDALGVTLANLDEKVLPDVARKT HHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHH FIALTDSSEKLQKIVKTAKYDLKTIKSHIDKISNIEINLKPIEEGEAKDTKEIKQDNKEL EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHH KYLKSVQKDLKDISRKISETIDKLDLIYDRLDVVIERSKEEVEKIDTDGVDIQALTDTRK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHH ILDDVHSLVATLVDNYDSELVPTIEYGFKSIREISDSGLVLLEQGISILPDVENLLGDFT HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCHHHHHHHHH KITNLSNEQLVKLQDDFPKIQDQVHKLAHKLKAVDEKDQIDELLDMITNEWDSQSMFMTS HHHCCCCHHEEEEHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEC PVDIEDNRLFPWPNYGSTATPFYTVLCLWVGGLLSSALLSLEVHEFDDGTVIKPYQIYLG CCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEECHHHHHHH KLLMFLSLAVCQALVASVGALLILGSYSLHPVMYVFYSIFVSLVFMTVIYTAGSLLDDVG HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KAIIVVILVLQIAGTSGNFPIEVAPVLFQKIYPYLPFTYAINGMRQIMAGIVYPILIKDT HHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH IILSVYMVGALICGLSLKGLLNKTTTKLMGKLAESDILRH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377; 1459957 [H]