Click here to switch to the map view.

The map label for this gene is ppdD [C]

Identifier: 187933890

GI number: 187933890

Start: 3469205

End: 3469621

Strand: Reverse

Name: ppdD [C]

Synonym: CLL_A3300

Alternate gene names: 187933890

Gene position: 3469621-3469205 (Counterclockwise)

Preceding gene: 187933106

Following gene: 187935114

Centisome position: 91.3

GC content: 30.94

Gene sequence:

>417_bases
ATGAACAAATTATCAATCAAATCAATGTCAAATCAAATTTCAAAGAAAAAGAAGAAGGGGTTTACATTAGTAGAACTTAT
CATCGTTATTGCAATCATTGCAATACTAGCAGCAATTGCTATTCCTAAGTTTGGTAATATATCACAAGATGCAAATAAAA
AAGCTGATATAGCTACAGCTAAAAATATGCATAGCATAGCAGCTACATTAATAGCAGATGGCACTGTTACTCCACCTGAT
AAAGATACTATTAATATTACAGATAGCGTGATACCTAAAATTGATGGACCAATACCTGCACCTAAAGCTATTAAAGACAA
AACATTTAGTGTAACACTTGATGAAGATGCAAATGTTAAAGTACTTGCAGATAAAACAGAAGTATATCCTACTCCTAGTG
GAATATATGAAAAATAA

Upstream 100 bases:

>100_bases
TTAACGATTCAAAAAAGCAAATTTCAATGCTAACTCGCCATTATACTAAAATATTAATAATAAGCTAAAACAATATCATA
ATTTATAAGGGGGATTTTCT

Downstream 100 bases:

>100_bases
TAATAATTTAATTAAATAAATTTATATCAAAGTGTAAAGCTTAATTTTAGGCTTTACACTTTACTCTATAAAATGGAATT
AAGTTGAAAGTGAAGAATGA

Product: type IV pilin

Products: NA

Alternate protein names: Prepilin Peptidase-Dependent

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MNKLSIKSMSNQISKKKKKGFTLVELIIVIAIIAILAAIAIPKFGNISQDANKKADIATAKNMHSIAATLIADGTVTPPD
KDTINITDSVIPKIDGPIPAPKAIKDKTFSVTLDEDANVKVLADKTEVYPTPSGIYEK

Sequences:

>Translated_138_residues
MNKLSIKSMSNQISKKKKKGFTLVELIIVIAIIAILAAIAIPKFGNISQDANKKADIATAKNMHSIAATLIADGTVTPPD
KDTINITDSVIPKIDGPIPAPKAIKDKTFSVTLDEDANVKVLADKTEVYPTPSGIYEK
>Mature_138_residues
MNKLSIKSMSNQISKKKKKGFTLVELIIVIAIIAILAAIAIPKFGNISQDANKKADIATAKNMHSIAATLIADGTVTPPD
KDTINITDSVIPKIDGPIPAPKAIKDKTFSVTLDEDANVKVLADKTEVYPTPSGIYEK

Specific function: Not Yet Known. [C]

COG id: COG4969

COG function: function code NU; Tfp pilus assembly protein, major pilin PilA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14743; Mature: 14743

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLSIKSMSNQISKKKKKGFTLVELIIVIAIIAILAAIAIPKFGNISQDANKKADIATA
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
KNMHSIAATLIADGTVTPPDKDTINITDSVIPKIDGPIPAPKAIKDKTFSVTLDEDANVK
HHHHHHHHHHHCCCCCCCCCCCEEECCHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
VLADKTEVYPTPSGIYEK
EEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MNKLSIKSMSNQISKKKKKGFTLVELIIVIAIIAILAAIAIPKFGNISQDANKKADIATA
CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
KNMHSIAATLIADGTVTPPDKDTINITDSVIPKIDGPIPAPKAIKDKTFSVTLDEDANVK
HHHHHHHHHHHCCCCCCCCCCCEEECCHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEE
VLADKTEVYPTPSGIYEK
EEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA