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The map label for this gene is ybdL [C]

Identifier: 187927755

GI number: 187927755

Start: 700683

End: 701867

Strand: Reverse

Name: ybdL [C]

Synonym: Rpic_0659

Alternate gene names: 187927755

Gene position: 701867-700683 (Counterclockwise)

Preceding gene: 187927756

Following gene: 187927753

Centisome position: 17.8

GC content: 64.98

Gene sequence:

>1185_bases
ATGGACGCCCACCGCCTAAACACAGCCGCCCGGCTGGCCAATATCCGCGCCTTTCACGTGATGGAACTGGCCAAGCAGGC
CCGCGAGCTGGAACTGGCGGGGCGCAGTATCATCCACATGGGCATCGGCGAGCCGGATTTCACCGCCGCCGAGCCCGTCG
TGCAAGCGGCCGCCGACGCCATGCGGCGCGGCGTCACGCAGTACACCGGGGCCCTGGGCATCCGCTCGCTGCGCCAGGCC
ATCGCCCGCTACTACCACACCGTCTACGGCCTAGACATCGCGCCCGAGCGCATCATCGTGACGGCGGGCGCGTCGGCAGC
GTTGCTGCTGGCGTGTGCGGTGCTGGTGGAGATTGGCGGCGAAGTCCTGATGCCCGATCCAAGCTATCCGTGCAACCGTC
ACTTCGTGGCCGCCTTCAATGGCGAGGCGAAGCTGGTGCCGTCGGGGCCGGAAGAACGCTTTCAGTTGACTGCCGCGCAG
GTCGAAACCCACTGGGGCGAGCGCACGCAGGGTGTGCTGCTGGCCTCCCCTTCCAACCCGACGGGCACGTCGATCCTGCC
GGATGAGCTGCAGCGTATTGTGCAGGCGGTACGTGCACGAGGCGGATTCTCGATCGTCGATGAGATCTACCAAGGTTTGT
CATACGATCAGGCCCCGGTCTCCGCACTGTCGTTCGGCGACGATGTCGTCACGATCAACAGCTTTTCCAAGTATTTCAAC
ATGACCGGCTGGCGGCTCGGCTGGCTGGTGGCACCCGCCGAACTGGTGCCGGAGTTCGAGAAGGTCGCGCAGAACCTGTT
CATCTGCGCGTCGGCGGTGGCGCAATATGCGGCGCTCGCCTGCTTTGCGCCGGAAGCGTTGGCGATCTACGAAGAGCGCA
AGGCCGAATTCCGCCGCCGACGTGATTTCATCGTGCCAGCGCTGGAGTCGCTCGGCTTCAAGGTACCGGTCAAGCCGGAC
GGGGCGTTCTATGTCTACGCCGATTGCCGCGGCGTAAACCACCCGCACGCCGCCAATGCCGACGCCCTCACCCAGTCGAT
GCTGCATGACGCTGGCGTAGTGCTGGTGCCGGGGCTCGATTTTGGTCCACACACGGCGCAGCACTACATCCGGCTGTCGT
ACGCCACGTCGATGGCGCATCTGGAAGAAGCGGTCGCTAGGCTCGGCAAGCTATTCAGCCGGTAA

Upstream 100 bases:

>100_bases
TGCTGGACAAGCTGGCTACGCAAGTGCGCGCTGTCGAGGTCGCTGCCCGCCGGTAATTCGGCGTCTGCTGTTCGCTTTAC
CTTTTTCGCTTCGCTTCAAG

Downstream 100 bases:

>100_bases
AACACTCTACGCGTCGCCCAAACAGAAAAGGCCGTCCCGAAGGACGGCCTTTCCTATATAGCGCAGCGAATCGGGCCAAT
CAGGCTTGGCCCTGCGACTT

Product: aminotransferase

Products: NA

Alternate protein names: AspAT; Transaminase A [H]

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MDAHRLNTAARLANIRAFHVMELAKQARELELAGRSIIHMGIGEPDFTAAEPVVQAAADAMRRGVTQYTGALGIRSLRQA
IARYYHTVYGLDIAPERIIVTAGASAALLLACAVLVEIGGEVLMPDPSYPCNRHFVAAFNGEAKLVPSGPEERFQLTAAQ
VETHWGERTQGVLLASPSNPTGTSILPDELQRIVQAVRARGGFSIVDEIYQGLSYDQAPVSALSFGDDVVTINSFSKYFN
MTGWRLGWLVAPAELVPEFEKVAQNLFICASAVAQYAALACFAPEALAIYEERKAEFRRRRDFIVPALESLGFKVPVKPD
GAFYVYADCRGVNHPHAANADALTQSMLHDAGVVLVPGLDFGPHTAQHYIRLSYATSMAHLEEAVARLGKLFSR

Sequences:

>Translated_394_residues
MDAHRLNTAARLANIRAFHVMELAKQARELELAGRSIIHMGIGEPDFTAAEPVVQAAADAMRRGVTQYTGALGIRSLRQA
IARYYHTVYGLDIAPERIIVTAGASAALLLACAVLVEIGGEVLMPDPSYPCNRHFVAAFNGEAKLVPSGPEERFQLTAAQ
VETHWGERTQGVLLASPSNPTGTSILPDELQRIVQAVRARGGFSIVDEIYQGLSYDQAPVSALSFGDDVVTINSFSKYFN
MTGWRLGWLVAPAELVPEFEKVAQNLFICASAVAQYAALACFAPEALAIYEERKAEFRRRRDFIVPALESLGFKVPVKPD
GAFYVYADCRGVNHPHAANADALTQSMLHDAGVVLVPGLDFGPHTAQHYIRLSYATSMAHLEEAVARLGKLFSR
>Mature_394_residues
MDAHRLNTAARLANIRAFHVMELAKQARELELAGRSIIHMGIGEPDFTAAEPVVQAAADAMRRGVTQYTGALGIRSLRQA
IARYYHTVYGLDIAPERIIVTAGASAALLLACAVLVEIGGEVLMPDPSYPCNRHFVAAFNGEAKLVPSGPEERFQLTAAQ
VETHWGERTQGVLLASPSNPTGTSILPDELQRIVQAVRARGGFSIVDEIYQGLSYDQAPVSALSFGDDVVTINSFSKYFN
MTGWRLGWLVAPAELVPEFEKVAQNLFICASAVAQYAALACFAPEALAIYEERKAEFRRRRDFIVPALESLGFKVPVKPD
GAFYVYADCRGVNHPHAANADALTQSMLHDAGVVLVPGLDFGPHTAQHYIRLSYATSMAHLEEAVARLGKLFSR

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI95147551, Length=421, Percent_Identity=25.8907363420428, Blast_Score=132, Evalue=6e-31,
Organism=Homo sapiens, GI169881279, Length=421, Percent_Identity=25.8907363420428, Blast_Score=132, Evalue=6e-31,
Organism=Homo sapiens, GI56713254, Length=347, Percent_Identity=27.6657060518732, Blast_Score=125, Evalue=5e-29,
Organism=Homo sapiens, GI56713256, Length=347, Percent_Identity=27.6657060518732, Blast_Score=125, Evalue=7e-29,
Organism=Homo sapiens, GI4507369, Length=372, Percent_Identity=25.8064516129032, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI169881281, Length=410, Percent_Identity=24.1463414634146, Blast_Score=93, Evalue=5e-19,
Organism=Escherichia coli, GI1786816, Length=360, Percent_Identity=29.4444444444444, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788722, Length=377, Percent_Identity=26.790450928382, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788627, Length=394, Percent_Identity=25.1269035532995, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787710, Length=182, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71994472, Length=391, Percent_Identity=25.3196930946292, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI71994476, Length=391, Percent_Identity=25.3196930946292, Blast_Score=115, Evalue=6e-26,
Organism=Caenorhabditis elegans, GI17567369, Length=320, Percent_Identity=24.375, Blast_Score=98, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI17567663, Length=381, Percent_Identity=24.1469816272966, Blast_Score=94, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6322401, Length=389, Percent_Identity=23.6503856041131, Blast_Score=104, Evalue=2e-23,
Organism=Drosophila melanogaster, GI28573069, Length=388, Percent_Identity=26.5463917525773, Blast_Score=135, Evalue=6e-32,
Organism=Drosophila melanogaster, GI24646114, Length=388, Percent_Identity=26.5463917525773, Blast_Score=135, Evalue=6e-32,
Organism=Drosophila melanogaster, GI28573067, Length=388, Percent_Identity=26.5463917525773, Blast_Score=135, Evalue=6e-32,
Organism=Drosophila melanogaster, GI28573065, Length=388, Percent_Identity=26.5463917525773, Blast_Score=135, Evalue=6e-32,
Organism=Drosophila melanogaster, GI18859735, Length=410, Percent_Identity=23.6585365853659, Blast_Score=95, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001176
- InterPro:   IPR004839
- InterPro:   IPR004838
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: =2.6.1.1 [H]

Molecular weight: Translated: 42866; Mature: 42866

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAHRLNTAARLANIRAFHVMELAKQARELELAGRSIIHMGIGEPDFTAAEPVVQAAADA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH
MRRGVTQYTGALGIRSLRQAIARYYHTVYGLDIAPERIIVTAGASAALLLACAVLVEIGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCC
EVLMPDPSYPCNRHFVAAFNGEAKLVPSGPEERFQLTAAQVETHWGERTQGVLLASPSNP
CEECCCCCCCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
TGTSILPDELQRIVQAVRARGGFSIVDEIYQGLSYDQAPVSALSFGDDVVTINSFSKYFN
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHCCCCCEEEECHHHHHHC
MTGWRLGWLVAPAELVPEFEKVAQNLFICASAVAQYAALACFAPEALAIYEERKAEFRRR
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RDFIVPALESLGFKVPVKPDGAFYVYADCRGVNHPHAANADALTQSMLHDAGVVLVPGLD
HHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEECCCC
FGPHTAQHYIRLSYATSMAHLEEAVARLGKLFSR
CCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDAHRLNTAARLANIRAFHVMELAKQARELELAGRSIIHMGIGEPDFTAAEPVVQAAADA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH
MRRGVTQYTGALGIRSLRQAIARYYHTVYGLDIAPERIIVTAGASAALLLACAVLVEIGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCC
EVLMPDPSYPCNRHFVAAFNGEAKLVPSGPEERFQLTAAQVETHWGERTQGVLLASPSNP
CEECCCCCCCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCC
TGTSILPDELQRIVQAVRARGGFSIVDEIYQGLSYDQAPVSALSFGDDVVTINSFSKYFN
CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHCCCCCEEEECHHHHHHC
MTGWRLGWLVAPAELVPEFEKVAQNLFICASAVAQYAALACFAPEALAIYEERKAEFRRR
CCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
RDFIVPALESLGFKVPVKPDGAFYVYADCRGVNHPHAANADALTQSMLHDAGVVLVPGLD
HHHHHHHHHHCCCEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEECCCC
FGPHTAQHYIRLSYATSMAHLEEAVARLGKLFSR
CCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]