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The map label for this gene is ubiD

Identifier: 187927753

GI number: 187927753

Start: 697367

End: 698878

Strand: Reverse

Name: ubiD

Synonym: Rpic_0657

Alternate gene names: 187927753

Gene position: 698878-697367 (Counterclockwise)

Preceding gene: 187927755

Following gene: 187927752

Centisome position: 17.73

GC content: 63.96

Gene sequence:

>1512_bases
ATGCAATACAGGGACTTACGTGACTTTCTCGCCCAACTCGAACGCACGGGCGAACTGCGCCGCGTGCACCAGCCGGTATC
GCCGCGCCTGGAAATGACCGAAGTCTGTGACCGCCTGCTGCGCTCCGAAGGCCCGGCGGTAGTCTTCGCGCAGCCGGTGG
ACGGCGCACAGAAGTACGACATGCCGGTGCTGGCTAACCTGTTTGGCACCACACGTCGCGTGGCGCTGGGCATGGGCGCG
GAGTCGCTCGATGAACTGCGGGACATCGGTCGCCTGCTCTCGGCGTTGAAAGAGCCTGAACCGCCGCGCGGCCTGCGTGA
AGCCGGCAAGCTGTGGACGATGGCCAAGGCCGTGTGGGATATGGCGCCACGCAAGGTGTCGTCGCCGGCGTGCCAGGAGA
TCGTGTGGGAAGGGAATGACGTCGACCTCTCGCGCATTCCCGTACAGACGTGCTGGCCCGGCGATGCGGCTCCGCTCGTC
ACCTGGGGGCTGGTCATCACGCGCGGGCCGCATAAGAAACGGCAGAATCTGGGCATCTACCGGCAGCAGGTCATCAATCG
CAACCAGGTCATCATGCGCTGGCTGGCGCACCGCGGCGGCGCGCTGGATTTCCGCGAGCACGCCATCGCCAATCCCGGCC
AGCCGTTTCCGATCGCGGTGGCACTGGGCGCGGATCCGGCCACCATTCTCGGCGCGGTGACGCCGGTGCCGGATACGTTA
TCTGAGTACCAGTTTGCGGGGCTGCTGCGCGGCAGCCGGACTGAGCTTGCGACATGCCTGACGCCTTCGCTGGCGCAGGC
GCAACTGCAAGTGCCGGCCGGCGCCGAAATCATCCTCGAAGGCCATATCCAGCCGGATCCGACGCACCCGAGCGGCTATC
AACACGCGCTGGAAGGCCCCTTCGGCGATCACACAGGCTATTACAACGAGCAGGACTGGTTTCCCGTGTTCACGGTCGAG
CGCATCACGATGCGCCGCGACCCGATCTATCACTCTACGTACACAGGCAAGCCGCCCGATGAGCCGGCCGTGCTCGGCGT
GGCGCTCAATGAAGTGTTCGTGCCGCTGCTGCAGAAGCAGTTTCCGGAGATTGCCGATTTCTATCTGCCGCCCGAGGGCT
GCAGCTATCGCATGGCGCTGGTCAGCATGAAGAAGCAATACGCCGGCCACGCCAAGCGCGTGATGTTCGGCGTGTGGAGC
TTCCTGCGGCAGTTCATGTATACGAAGTTCATCGTCGTGGTGGACGACGACGTGAACCTGCGCGACTGGAAGGAAGTGAT
CTGGGCGATCACCACTCGCGTGGATCCGGCGCGCGACACGGTCATGGTCGAAAACACGCCGATCGATTACCTCGATTTTG
CGTCCCCGGTGTCGGGCCTGGGCTCCAAGATGGGCATCGATGCCACCAACAAATGGCCCGGCGAAACCACGCGCGAATGG
GGCCAGCCCATCGTCATGGATACCGCTGTCAAGGCCAAGGTCGACGCCATGTGGGACACGCTCTTCCAATAA

Upstream 100 bases:

>100_bases
CACCCTGCCTACACCAAAAAAATGTCGCCCGGACGACTATTCGGGGGACAGCCCCTCCGCGTGATAGGCGATCTACCTTA
CCTTTGGTTACAAAATCTCC

Downstream 100 bases:

>100_bases
CCACAAGGCTCGGCGGCCTGGCCTGCGAGCGAACGATCGTTCGGTTATTCTTAGCGAGTTAAGCGACTGCTGCATCTAAA
AGGCGGGCCCTCTTTGTCTA

Product: UbiD family decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 503; Mature: 503

Protein sequence:

>503_residues
MQYRDLRDFLAQLERTGELRRVHQPVSPRLEMTEVCDRLLRSEGPAVVFAQPVDGAQKYDMPVLANLFGTTRRVALGMGA
ESLDELRDIGRLLSALKEPEPPRGLREAGKLWTMAKAVWDMAPRKVSSPACQEIVWEGNDVDLSRIPVQTCWPGDAAPLV
TWGLVITRGPHKKRQNLGIYRQQVINRNQVIMRWLAHRGGALDFREHAIANPGQPFPIAVALGADPATILGAVTPVPDTL
SEYQFAGLLRGSRTELATCLTPSLAQAQLQVPAGAEIILEGHIQPDPTHPSGYQHALEGPFGDHTGYYNEQDWFPVFTVE
RITMRRDPIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFPEIADFYLPPEGCSYRMALVSMKKQYAGHAKRVMFGVWS
FLRQFMYTKFIVVVDDDVNLRDWKEVIWAITTRVDPARDTVMVENTPIDYLDFASPVSGLGSKMGIDATNKWPGETTREW
GQPIVMDTAVKAKVDAMWDTLFQ

Sequences:

>Translated_503_residues
MQYRDLRDFLAQLERTGELRRVHQPVSPRLEMTEVCDRLLRSEGPAVVFAQPVDGAQKYDMPVLANLFGTTRRVALGMGA
ESLDELRDIGRLLSALKEPEPPRGLREAGKLWTMAKAVWDMAPRKVSSPACQEIVWEGNDVDLSRIPVQTCWPGDAAPLV
TWGLVITRGPHKKRQNLGIYRQQVINRNQVIMRWLAHRGGALDFREHAIANPGQPFPIAVALGADPATILGAVTPVPDTL
SEYQFAGLLRGSRTELATCLTPSLAQAQLQVPAGAEIILEGHIQPDPTHPSGYQHALEGPFGDHTGYYNEQDWFPVFTVE
RITMRRDPIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFPEIADFYLPPEGCSYRMALVSMKKQYAGHAKRVMFGVWS
FLRQFMYTKFIVVVDDDVNLRDWKEVIWAITTRVDPARDTVMVENTPIDYLDFASPVSGLGSKMGIDATNKWPGETTREW
GQPIVMDTAVKAKVDAMWDTLFQ
>Mature_503_residues
MQYRDLRDFLAQLERTGELRRVHQPVSPRLEMTEVCDRLLRSEGPAVVFAQPVDGAQKYDMPVLANLFGTTRRVALGMGA
ESLDELRDIGRLLSALKEPEPPRGLREAGKLWTMAKAVWDMAPRKVSSPACQEIVWEGNDVDLSRIPVQTCWPGDAAPLV
TWGLVITRGPHKKRQNLGIYRQQVINRNQVIMRWLAHRGGALDFREHAIANPGQPFPIAVALGADPATILGAVTPVPDTL
SEYQFAGLLRGSRTELATCLTPSLAQAQLQVPAGAEIILEGHIQPDPTHPSGYQHALEGPFGDHTGYYNEQDWFPVFTVE
RITMRRDPIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFPEIADFYLPPEGCSYRMALVSMKKQYAGHAKRVMFGVWS
FLRQFMYTKFIVVVDDDVNLRDWKEVIWAITTRVDPARDTVMVENTPIDYLDFASPVSGLGSKMGIDATNKWPGETTREW
GQPIVMDTAVKAKVDAMWDTLFQ

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=501, Percent_Identity=67.4650698602794, Blast_Score=711, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=470, Percent_Identity=24.0425531914894, Blast_Score=106, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_RALPJ (B2U7E6)

Other databases:

- EMBL:   CP001068
- RefSeq:   YP_001898240.1
- ProteinModelPortal:   B2U7E6
- SMR:   B2U7E6
- GeneID:   6286771
- GenomeReviews:   CP001068_GR
- KEGG:   rpi:Rpic_0657
- HOGENOM:   HBG564733
- OMA:   LNRIYTP
- ProtClustDB:   CLSK896652
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 56358; Mature: 56358

Theoretical pI: Translated: 6.20; Mature: 6.20

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYRDLRDFLAQLERTGELRRVHQPVSPRLEMTEVCDRLLRSEGPAVVFAQPVDGAQKYD
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHCC
MPVLANLFGTTRRVALGMGAESLDELRDIGRLLSALKEPEPPRGLREAGKLWTMAKAVWD
CHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
MAPRKVSSPACQEIVWEGNDVDLSRIPVQTCWPGDAAPLVTWGLVITRGPHKKRQNLGIY
HCCCCCCCHHHHHHEECCCCCCHHHCCCCCCCCCCCCHHHHHHEEEECCCCHHHHHCCHH
RQQVINRNQVIMRWLAHRGGALDFREHAIANPGQPFPIAVALGADPATILGAVTPVPDTL
HHHHHCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCHHH
SEYQFAGLLRGSRTELATCLTPSLAQAQLQVPAGAEIILEGHIQPDPTHPSGYQHALEGP
HHHHHHHHHCCCHHHHHHHHCCHHHHHEEECCCCCEEEEECCCCCCCCCCCCCHHHHCCC
FGDHTGYYNEQDWFPVFTVERITMRRDPIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQ
CCCCCCCCCCCCCCEEEEHHHHHHHCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHH
FPEIADFYLPPEGCSYRMALVSMKKQYAGHAKRVMFGVWSFLRQFMYTKFIVVVDDDVNL
CHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCH
RDWKEVIWAITTRVDPARDTVMVENTPIDYLDFASPVSGLGSKMGIDATNKWPGETTREW
HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHCHHHHCCCCCCCCCCCCCCCCCHHHH
GQPIVMDTAVKAKVDAMWDTLFQ
CCCEEEEHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQYRDLRDFLAQLERTGELRRVHQPVSPRLEMTEVCDRLLRSEGPAVVFAQPVDGAQKYD
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHCC
MPVLANLFGTTRRVALGMGAESLDELRDIGRLLSALKEPEPPRGLREAGKLWTMAKAVWD
CHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
MAPRKVSSPACQEIVWEGNDVDLSRIPVQTCWPGDAAPLVTWGLVITRGPHKKRQNLGIY
HCCCCCCCHHHHHHEECCCCCCHHHCCCCCCCCCCCCHHHHHHEEEECCCCHHHHHCCHH
RQQVINRNQVIMRWLAHRGGALDFREHAIANPGQPFPIAVALGADPATILGAVTPVPDTL
HHHHHCHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHCCCCCCHHH
SEYQFAGLLRGSRTELATCLTPSLAQAQLQVPAGAEIILEGHIQPDPTHPSGYQHALEGP
HHHHHHHHHCCCHHHHHHHHCCHHHHHEEECCCCCEEEEECCCCCCCCCCCCCHHHHCCC
FGDHTGYYNEQDWFPVFTVERITMRRDPIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQ
CCCCCCCCCCCCCCEEEEHHHHHHHCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHH
FPEIADFYLPPEGCSYRMALVSMKKQYAGHAKRVMFGVWSFLRQFMYTKFIVVVDDDVNL
CHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCH
RDWKEVIWAITTRVDPARDTVMVENTPIDYLDFASPVSGLGSKMGIDATNKWPGETTREW
HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHCHHHHCCCCCCCCCCCCCCCCCHHHH
GQPIVMDTAVKAKVDAMWDTLFQ
CCCEEEEHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA