| Definition | Ralstonia pickettii 12J chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010682 |
| Length | 3,942,557 |
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The map label for this gene is surA [H]
Identifier: 187927495
GI number: 187927495
Start: 417550
End: 419052
Strand: Direct
Name: surA [H]
Synonym: Rpic_0392
Alternate gene names: 187927495
Gene position: 417550-419052 (Clockwise)
Preceding gene: 187927494
Following gene: 187927496
Centisome position: 10.59
GC content: 66.6
Gene sequence:
>1503_bases ATGAATAACGACATCATGGCTTTCCAATCGACCGCTTTCGCCACGCGTGTGGCTCCTCTGGGCCGCTTGCGTGTTGCCAC CGGCGTGCTGCTTGCGCTGTTGGCGGGGACCACGCTGTCGCCAGCCGTCCACGCGCAGCAGGCGCAATCGGCAAAAAAGA GTGCACCGGTGCGGGGCATCTTCGCCAACCCCGGTTCGTCGCCGAGCCAGCCGCTGCTGCAGGGCACGCTGCCCGAGCCA ACGGCTCCAGGCGCGCCGCGCAGCCAGTTGGTCGACGAGGTGGTGGCTGTGGTCAACACCGACGTCATCACCCGCCGCGA ACTGCTCAACCGCGCGGATCTGGTCGAGCGCACGTTCCGCGCACAGAACCGCCCGCTGCCGCCGCGCGCCGATCTGCTCG GCGAAGTGCTTGAGCAGCTCATCCTGGAGCGCGTGCAGGCGCAGACCGCCAAGGAAAGCGGCATCCGCGTGTCCGACGCC GATGTGGATCGCGCCGTGGAAAGCGTGGCCCAGCGCAACAACCTGTCGGTGCCGCAGCTCAAGAGCAAGCTGAAGGACGC CGGCATGACGTACGACAAGTACCGCGACGACCTGCGTCAGGAAATCCTTCTGGCGCGCCTGCGTGAGCGCGAGGTCGACT CGAAGGTGCAGGTCTACGACGGCGAGATCGACAACTATCTGGCGCAGCAGGGTGGCGGCACGGCCCCGGCCGGCGAACAG CAATACAACGTCGCGCAGATTCTCGTGCCGGTCGCCGAAGGCGCCACGGATGCCGAGAAGGCCGCAGCGCGCAAGAAGGC CGAAGGCCTGCTCAAGCAAGCGCAGGGCGGCGCGGATTTCGCCAAGCTGGCGCGTGACAATTCTGGCGCGCAAGATGCCG CGCAAGGCGGCGAGCTTGGGCTGCGGCCGATCGGGCGCCTGCCGGCTGTGTTTGCCAACGCCGTGGTCGACATGAAGGCG GGCCAGGTGGCGAGCCAAGTGGTCGAAAGCCCGGCTGGTTATCACGTGATCAAGCTGTTGGAGAAGCGCGCATCGAGCAC GGCCATTGCCGCCAAGGTGCAGCAGACGCAAGTGCGCCACATCCTGATCAAGACCGGTCCGACGATGTCGGCGGACGACG CGCGCCGCCAGTTGGTGGGCCTGCGTGACCGGATCGTCCACGGCTACGATTTTGGCGATGCGGCACGCCGGTATTCGCAG GACGGCTCTGCCGGTGCGGGTGGCGAGCTGGGCTGGGTGTCGCCGGGCCAGCTGGTGCCGGAATTTGAGCAGGCCATGAA CCAGCTCAAGCCGGGCGATGTGTCGCAGCCGGTGCAAAGCCAGTTCGGTGTGCACCTGATCCAGGTGGAAGGCCGCCGCG AGGCAGAGGTGTCGGGAGACCGCGAGCGCGACTACGCGCGCTCGGTCATTCGCGAGCAGAAGGTGCAGGCCGCCTATGAG GATTGGCTGCGTGAACTGCGCGATTCGGCACACGTGGAATACCGCGTGAACCGTCAGCAATAA
Upstream 100 bases:
>100_bases TCGAAGGTGGGGAACAATCCGATCGACGTGATTCGTCTGAACGTGCCCGGCTACCAGCCGGTGAACGCACAGCCGATCAC GCCGTCCGTGCTGGATCAAT
Downstream 100 bases:
>100_bases GCTACGGGCATCCGCATCGCTCACGGCCGCCTGCGGGCGGCCGTGGCGTTTCTAGATCGCTCCAGAAACCATCGCAGGAA AGCGCTGCATGCTGAACATT
Product: SurA domain
Products: NA
Alternate protein names: Peptidyl-prolyl cis-trans isomerase surA; PPIase surA; Rotamase surA [H]
Number of amino acids: Translated: 500; Mature: 500
Protein sequence:
>500_residues MNNDIMAFQSTAFATRVAPLGRLRVATGVLLALLAGTTLSPAVHAQQAQSAKKSAPVRGIFANPGSSPSQPLLQGTLPEP TAPGAPRSQLVDEVVAVVNTDVITRRELLNRADLVERTFRAQNRPLPPRADLLGEVLEQLILERVQAQTAKESGIRVSDA DVDRAVESVAQRNNLSVPQLKSKLKDAGMTYDKYRDDLRQEILLARLREREVDSKVQVYDGEIDNYLAQQGGGTAPAGEQ QYNVAQILVPVAEGATDAEKAAARKKAEGLLKQAQGGADFAKLARDNSGAQDAAQGGELGLRPIGRLPAVFANAVVDMKA GQVASQVVESPAGYHVIKLLEKRASSTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVGLRDRIVHGYDFGDAARRYSQ DGSAGAGGELGWVSPGQLVPEFEQAMNQLKPGDVSQPVQSQFGVHLIQVEGRREAEVSGDRERDYARSVIREQKVQAAYE DWLRELRDSAHVEYRVNRQQ
Sequences:
>Translated_500_residues MNNDIMAFQSTAFATRVAPLGRLRVATGVLLALLAGTTLSPAVHAQQAQSAKKSAPVRGIFANPGSSPSQPLLQGTLPEP TAPGAPRSQLVDEVVAVVNTDVITRRELLNRADLVERTFRAQNRPLPPRADLLGEVLEQLILERVQAQTAKESGIRVSDA DVDRAVESVAQRNNLSVPQLKSKLKDAGMTYDKYRDDLRQEILLARLREREVDSKVQVYDGEIDNYLAQQGGGTAPAGEQ QYNVAQILVPVAEGATDAEKAAARKKAEGLLKQAQGGADFAKLARDNSGAQDAAQGGELGLRPIGRLPAVFANAVVDMKA GQVASQVVESPAGYHVIKLLEKRASSTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVGLRDRIVHGYDFGDAARRYSQ DGSAGAGGELGWVSPGQLVPEFEQAMNQLKPGDVSQPVQSQFGVHLIQVEGRREAEVSGDRERDYARSVIREQKVQAAYE DWLRELRDSAHVEYRVNRQQ >Mature_500_residues MNNDIMAFQSTAFATRVAPLGRLRVATGVLLALLAGTTLSPAVHAQQAQSAKKSAPVRGIFANPGSSPSQPLLQGTLPEP TAPGAPRSQLVDEVVAVVNTDVITRRELLNRADLVERTFRAQNRPLPPRADLLGEVLEQLILERVQAQTAKESGIRVSDA DVDRAVESVAQRNNLSVPQLKSKLKDAGMTYDKYRDDLRQEILLARLREREVDSKVQVYDGEIDNYLAQQGGGTAPAGEQ QYNVAQILVPVAEGATDAEKAAARKKAEGLLKQAQGGADFAKLARDNSGAQDAAQGGELGLRPIGRLPAVFANAVVDMKA GQVASQVVESPAGYHVIKLLEKRASSTAIAAKVQQTQVRHILIKTGPTMSADDARRQLVGLRDRIVHGYDFGDAARRYSQ DGSAGAGGELGWVSPGQLVPEFEQAMNQLKPGDVSQPVQSQFGVHLIQVEGRREAEVSGDRERDYARSVIREQKVQAAYE DWLRELRDSAHVEYRVNRQQ
Specific function: Chaperone involved in the correct folding and assembly of outer membrane proteins. It recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act
COG id: COG0760
COG function: function code O; Parvulin-like peptidyl-prolyl isomerase
Gene ontology:
Cell location: Periplasm. Note=Is capable of associating with the outer membrane (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PpiC domains [H]
Homologues:
Organism=Escherichia coli, GI1786238, Length=419, Percent_Identity=33.1742243436754, Blast_Score=219, Evalue=2e-58,
Paralogues:
None
Copy number: 400 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000297 - InterPro: IPR023058 - InterPro: IPR023034 - InterPro: IPR015391 - InterPro: IPR008880 [H]
Pfam domain/function: PF00639 Rotamase; PF09312 SurA_N [H]
EC number: =5.2.1.8 [H]
Molecular weight: Translated: 54187; Mature: 54187
Theoretical pI: Translated: 8.64; Mature: 8.64
Prosite motif: PS01096 PPIC_PPIASE_1 ; PS50198 PPIC_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNDIMAFQSTAFATRVAPLGRLRVATGVLLALLAGTTLSPAVHAQQAQSAKKSAPVRGI CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEE FANPGSSPSQPLLQGTLPEPTAPGAPRSQLVDEVVAVVNTDVITRRELLNRADLVERTFR ECCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQNRPLPPRADLLGEVLEQLILERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVPQL HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHH KSKLKDAGMTYDKYRDDLRQEILLARLREREVDSKVQVYDGEIDNYLAQQGGGTAPAGEQ HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCC QYNVAQILVPVAEGATDAEKAAARKKAEGLLKQAQGGADFAKLARDNSGAQDAAQGGELG CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHCCCCCC LRPIGRLPAVFANAVVDMKAGQVASQVVESPAGYHVIKLLEKRASSTAIAAKVQQTQVRH CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHE ILIKTGPTMSADDARRQLVGLRDRIVHGYDFGDAARRYSQDGSAGAGGELGWVSPGQLVP EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCH EFEQAMNQLKPGDVSQPVQSQFGVHLIQVEGRREAEVSGDRERDYARSVIREQKVQAAYE HHHHHHHHCCCCCCCCHHHHHHCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH DWLRELRDSAHVEYRVNRQQ HHHHHHHHCCCEEEEECCCC >Mature Secondary Structure MNNDIMAFQSTAFATRVAPLGRLRVATGVLLALLAGTTLSPAVHAQQAQSAKKSAPVRGI CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCEE FANPGSSPSQPLLQGTLPEPTAPGAPRSQLVDEVVAVVNTDVITRRELLNRADLVERTFR ECCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQNRPLPPRADLLGEVLEQLILERVQAQTAKESGIRVSDADVDRAVESVAQRNNLSVPQL HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHH KSKLKDAGMTYDKYRDDLRQEILLARLREREVDSKVQVYDGEIDNYLAQQGGGTAPAGEQ HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCCCCCC QYNVAQILVPVAEGATDAEKAAARKKAEGLLKQAQGGADFAKLARDNSGAQDAAQGGELG CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHCCCCCC LRPIGRLPAVFANAVVDMKAGQVASQVVESPAGYHVIKLLEKRASSTAIAAKVQQTQVRH CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHE ILIKTGPTMSADDARRQLVGLRDRIVHGYDFGDAARRYSQDGSAGAGGELGWVSPGQLVP EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCH EFEQAMNQLKPGDVSQPVQSQFGVHLIQVEGRREAEVSGDRERDYARSVIREQKVQAAYE HHHHHHHHCCCCCCCCHHHHHHCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH DWLRELRDSAHVEYRVNRQQ HHHHHHHHCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11823852 [H]