Click here to switch to the map view.

The map label for this gene is rlpA [H]

Identifier: 187918591

GI number: 187918591

Start: 785191

End: 785997

Strand: Direct

Name: rlpA [H]

Synonym: BH0735

Alternate gene names: 187918591

Gene position: 785191-785997 (Clockwise)

Preceding gene: 187918589

Following gene: 187918594

Centisome position: 85.13

GC content: 32.84

Gene sequence:

>807_bases
ATGCAATATGGTATAATATGTGGTATGGTAAGTTTGTTTAGCCTTATGGGTACTAGCTTTAGATTTGGATTTTTATTTTT
ATTTTTTACCGCTACTCAATTGCACAGTGCTACTGTAGGGCTTGCTTCATGGTATGGGGAAGCTTTTCATGGTAAGCCTA
CTGCTAATGGTGAAAAATTTGACATGACAGCTCTTACGGCTGCTCACAAGGAACTTCCATTTAATACTGTTGTAAGAGTT
ACTAATTTACTTAATAATAGGACAGTTGTTGTAAGAATTAATGATAGGGGTCCTTTTAGAAAAGATCGAATAATTGATTT
ATCAAAATCTGCTGCTGAAAAGCTAGATTTTTTAGGAATAGGTGTTGCTCCTGTAAAAATTGAAGTATTAGAACAATTGA
GTGAAAAAAAAGCTGTAACGCAAGAGTCTAGAAAAACTGTTAATGGTGAAAATTCTTCTAAGTCTGATTCTGTTGTTTCT
GCTTCAAAATTGGAGAGGGATGTTGCTTTAGATAAAGATCACTCTGAGGTTGCAGAAAAGCTTTTAGATAATTCAACTAA
GGAACCAGATTTCTATATACAAGTTGGTTCTTATAAGATTAAGGATTATGCTCAAAGAGCTTATAAAATACTTCAAAAAG
CTGGACTTAATGTTTTAGTGAATTCCCATGGACCTTTTTTTACAGTGTTTATTCCTACTTATGCTGATGATGTTCATAAG
AATGTTGAACTTATTAAATCCACAGGATATCAGGATATTTTGGTAAGAAAGACTAAGATTCCAGGAGATAGTATTTCTAT
AGATTAG

Upstream 100 bases:

>100_bases
ACTTATTTATTAAAGCAAAAAAATTGCAAATAAACAATTTAGGTTAACTTAGTTTGAGTGATTTTATGTTATAAGTCTTA
AGCTTTCTTTATCTTGTAAT

Downstream 100 bases:

>100_bases
TATTTTGCTCTATCTCTTTAAAAAATGTATTTATTGTGTGTTTGATATTTTCAAAGTTTAAGTAATAAGTCTTTATTTCA
GGTAGGGATTGTAGGAATAA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MQYGIICGMVSLFSLMGTSFRFGFLFLFFTATQLHSATVGLASWYGEAFHGKPTANGEKFDMTALTAAHKELPFNTVVRV
TNLLNNRTVVVRINDRGPFRKDRIIDLSKSAAEKLDFLGIGVAPVKIEVLEQLSEKKAVTQESRKTVNGENSSKSDSVVS
ASKLERDVALDKDHSEVAEKLLDNSTKEPDFYIQVGSYKIKDYAQRAYKILQKAGLNVLVNSHGPFFTVFIPTYADDVHK
NVELIKSTGYQDILVRKTKIPGDSISID

Sequences:

>Translated_268_residues
MQYGIICGMVSLFSLMGTSFRFGFLFLFFTATQLHSATVGLASWYGEAFHGKPTANGEKFDMTALTAAHKELPFNTVVRV
TNLLNNRTVVVRINDRGPFRKDRIIDLSKSAAEKLDFLGIGVAPVKIEVLEQLSEKKAVTQESRKTVNGENSSKSDSVVS
ASKLERDVALDKDHSEVAEKLLDNSTKEPDFYIQVGSYKIKDYAQRAYKILQKAGLNVLVNSHGPFFTVFIPTYADDVHK
NVELIKSTGYQDILVRKTKIPGDSISID
>Mature_268_residues
MQYGIICGMVSLFSLMGTSFRFGFLFLFFTATQLHSATVGLASWYGEAFHGKPTANGEKFDMTALTAAHKELPFNTVVRV
TNLLNNRTVVVRINDRGPFRKDRIIDLSKSAAEKLDFLGIGVAPVKIEVLEQLSEKKAVTQESRKTVNGENSSKSDSVVS
ASKLERDVALDKDHSEVAEKLLDNSTKEPDFYIQVGSYKIKDYAQRAYKILQKAGLNVLVNSHGPFFTVFIPTYADDVHK
NVELIKSTGYQDILVRKTKIPGDSISID

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=78, Percent_Identity=52.5641025641026, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 29777; Mature: 29777

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYGIICGMVSLFSLMGTSFRFGFLFLFFTATQLHSATVGLASWYGEAFHGKPTANGEKF
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCEE
DMTALTAAHKELPFNTVVRVTNLLNNRTVVVRINDRGPFRKDRIIDLSKSAAEKLDFLGI
EHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEECHHHHHHHHHHHCC
GVAPVKIEVLEQLSEKKAVTQESRKTVNGENSSKSDSVVSASKLERDVALDKDHSEVAEK
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
LLDNSTKEPDFYIQVGSYKIKDYAQRAYKILQKAGLNVLVNSHGPFFTVFIPTYADDVHK
HHCCCCCCCCEEEEECCEEHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCHHHHHHH
NVELIKSTGYQDILVRKTKIPGDSISID
HHHHHHHCCCHHEEEEEECCCCCCCCCC
>Mature Secondary Structure
MQYGIICGMVSLFSLMGTSFRFGFLFLFFTATQLHSATVGLASWYGEAFHGKPTANGEKF
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCEE
DMTALTAAHKELPFNTVVRVTNLLNNRTVVVRINDRGPFRKDRIIDLSKSAAEKLDFLGI
EHHHHHHHHHHCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEECHHHHHHHHHHHCC
GVAPVKIEVLEQLSEKKAVTQESRKTVNGENSSKSDSVVSASKLERDVALDKDHSEVAEK
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHH
LLDNSTKEPDFYIQVGSYKIKDYAQRAYKILQKAGLNVLVNSHGPFFTVFIPTYADDVHK
HHCCCCCCCCEEEEECCEEHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCHHHHHHH
NVELIKSTGYQDILVRKTKIPGDSISID
HHHHHHHCCCHHEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]