Definition | Borrelia hermsii DAH chromosome, complete genome. |
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Accession | NC_010673 |
Length | 922,307 |
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The map label for this gene is pheT
Identifier: 187918379
GI number: 187918379
Start: 530451
End: 532145
Strand: Direct
Name: pheT
Synonym: BH0514
Alternate gene names: 187918379
Gene position: 530451-532145 (Clockwise)
Preceding gene: 187918378
Following gene: 187918380
Centisome position: 57.51
GC content: 31.27
Gene sequence:
>1695_bases ATGCCTAAAGTTGAAGTTTATAGAAGTATTTTATTAGGAAAGATAGGAAAAGATTTAACGGATTGTGAGCTTGTATCTAT TCTTGAAATGGCTAAGGCTGAAATTTGTGAATTTTATACGGGTAATGACAAGATAAAAATTGAATTTAATGATACAAATA GACCCGATTTGTGGTCTTATACAGGACTTGCGCGTCAAATTAAGACATATCTTTTTGGTCAGTTACCTTCGTTTGAGTTT TTTTCAACAGCAGATAATTTGCAAAAATTTTATGGTGAAATTTTGGTCAGTCCTGAAGCATTTAGTATTAGGCCTTTTAT TTTTGGATTTTTAGCAAAAGGGATGATTTGTAATGAGCAAATGCTTGAAACTTTAATTCAGTTGCAAGAAAAGCTTTGTC ATAATTATGGACAAAAGCGTAAAAGAGTGGCAATGGGAATGTATTCATCAGCTTCTATTGAGTTTCCGGTAAGTTATGTT ACATGTAATTCTGATTATAGATTTATTCCTTTAGGTATGGACATTGAAATGTCTATTAAAGAGATCAATAAGAGACATCC TAAGGGAATAGAATATGCATCAATTCTTGAGCATTTTACCGAATATCCTTTATTGTTGGATTATAATGATAAAGTACTCT CTTATCCGCCGGTAATCAATTCTCATGATATTGGAGCTTTAAAGGTAGGTGATACCGATTTGTTTATTGAAGTTACGGGA ACTAATCTCGAGGCTACTTTGTTATCTTTATCAGTTGTTGCTTGTGATTTGCATGATATGGGATTTGAAATTTTACCAGT AAAGACTGTTTTTCCTAAGGAGACTCCATTTGGGAAGGAAATCATTTGTCCTTATTATTTTCAAAATACTCTAGAGGTTA GTGTTGAGAGTGTTAATAGGATGTTTGGTAGCAATTTTACAGTAAATGATATGTGTCTTGATTTAAAAAAATTAGGGATA TCAGCGTACTTTAAGGAGTTAGATAAGTTTTATATTATTCCTCCTGTTTATAGGAATGATTTTCTTCACGAAGTGGATGT TATTGAAGAAATAATGATAGGTAGGGGATTGGATAGTTTTAAACCAGAGCTTCCCAAAGATTTTACTTTGGGAAAATTAA GTCAGATAGAAGAGTTTTCAAGAAAGATTAAAAATTTAATGATTGGAATGGGATTTCAAGAGATGATTTATAATTATCTA GGTTCTAGGACAGATTTTATTGAGAAGATGAATATTAAGAGTGATGAATTCTTAAGTGTTGCCAATCCAATGACAGAGGG TTATGAGTATGTTAGAGGCTCAATAGTGCCTGATTTACTTAAATCTGAGAGCATTAGTTCAAATTTCCCTTATCCGCATA AGATTTTTGAAATTGGCAAGGTAGCTTTAAAGGATTTAAGTAGTGTTGATGGTACTATGACTTATGATAATTTAGCTTTT TTGATGGCTGATAAGGAGTTTTCATTTAATGAGATTAATTCTTTAGTTTCATCTCTTTTTTATTATTTAAATATTGAATT TAAGTTAAGGGAATCAAGTCAAACTCTTTATATAAATGGTAGGGGAGCTGATATTTTAATCAATGATATCATTTTAGGTA GCTTTGGTGAGGTGTCGCCTTACATATTGAGCAATTTTGGAATTATGGTGCCATGTTGCGTTCTAGAGATTAATCTTAAT AAGATTTTACATTAA
Upstream 100 bases:
>100_bases GGTATTGATAGAATGGCTTTAATGCATTTAGGTTTAAGTGATTTAAGGGAGCTTTTTACCCATGATATTGGTGATGTTGT ATTAAGGCGGGGAAAAGTAA
Downstream 100 bases:
>100_bases AAGAAATGCATAAAATTTTTTATTTGTGGCATTTGAATGAAGTTATATTTAAATATTTGATGTAGTGCATTTTATAGGTT AAATGGAGTTAATGGATATT
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS
Number of amino acids: Translated: 564; Mature: 563
Protein sequence:
>564_residues MPKVEVYRSILLGKIGKDLTDCELVSILEMAKAEICEFYTGNDKIKIEFNDTNRPDLWSYTGLARQIKTYLFGQLPSFEF FSTADNLQKFYGEILVSPEAFSIRPFIFGFLAKGMICNEQMLETLIQLQEKLCHNYGQKRKRVAMGMYSSASIEFPVSYV TCNSDYRFIPLGMDIEMSIKEINKRHPKGIEYASILEHFTEYPLLLDYNDKVLSYPPVINSHDIGALKVGDTDLFIEVTG TNLEATLLSLSVVACDLHDMGFEILPVKTVFPKETPFGKEIICPYYFQNTLEVSVESVNRMFGSNFTVNDMCLDLKKLGI SAYFKELDKFYIIPPVYRNDFLHEVDVIEEIMIGRGLDSFKPELPKDFTLGKLSQIEEFSRKIKNLMIGMGFQEMIYNYL GSRTDFIEKMNIKSDEFLSVANPMTEGYEYVRGSIVPDLLKSESISSNFPYPHKIFEIGKVALKDLSSVDGTMTYDNLAF LMADKEFSFNEINSLVSSLFYYLNIEFKLRESSQTLYINGRGADILINDIILGSFGEVSPYILSNFGIMVPCCVLEINLN KILH
Sequences:
>Translated_564_residues MPKVEVYRSILLGKIGKDLTDCELVSILEMAKAEICEFYTGNDKIKIEFNDTNRPDLWSYTGLARQIKTYLFGQLPSFEF FSTADNLQKFYGEILVSPEAFSIRPFIFGFLAKGMICNEQMLETLIQLQEKLCHNYGQKRKRVAMGMYSSASIEFPVSYV TCNSDYRFIPLGMDIEMSIKEINKRHPKGIEYASILEHFTEYPLLLDYNDKVLSYPPVINSHDIGALKVGDTDLFIEVTG TNLEATLLSLSVVACDLHDMGFEILPVKTVFPKETPFGKEIICPYYFQNTLEVSVESVNRMFGSNFTVNDMCLDLKKLGI SAYFKELDKFYIIPPVYRNDFLHEVDVIEEIMIGRGLDSFKPELPKDFTLGKLSQIEEFSRKIKNLMIGMGFQEMIYNYL GSRTDFIEKMNIKSDEFLSVANPMTEGYEYVRGSIVPDLLKSESISSNFPYPHKIFEIGKVALKDLSSVDGTMTYDNLAF LMADKEFSFNEINSLVSSLFYYLNIEFKLRESSQTLYINGRGADILINDIILGSFGEVSPYILSNFGIMVPCCVLEINLN KILH >Mature_563_residues PKVEVYRSILLGKIGKDLTDCELVSILEMAKAEICEFYTGNDKIKIEFNDTNRPDLWSYTGLARQIKTYLFGQLPSFEFF STADNLQKFYGEILVSPEAFSIRPFIFGFLAKGMICNEQMLETLIQLQEKLCHNYGQKRKRVAMGMYSSASIEFPVSYVT CNSDYRFIPLGMDIEMSIKEINKRHPKGIEYASILEHFTEYPLLLDYNDKVLSYPPVINSHDIGALKVGDTDLFIEVTGT NLEATLLSLSVVACDLHDMGFEILPVKTVFPKETPFGKEIICPYYFQNTLEVSVESVNRMFGSNFTVNDMCLDLKKLGIS AYFKELDKFYIIPPVYRNDFLHEVDVIEEIMIGRGLDSFKPELPKDFTLGKLSQIEEFSRKIKNLMIGMGFQEMIYNYLG SRTDFIEKMNIKSDEFLSVANPMTEGYEYVRGSIVPDLLKSESISSNFPYPHKIFEIGKVALKDLSSVDGTMTYDNLAFL MADKEFSFNEINSLVSSLFYYLNIEFKLRESSQTLYINGRGADILINDIILGSFGEVSPYILSNFGIMVPCCVLEINLNK ILH
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 B5 domain
Homologues:
Organism=Homo sapiens, GI124028525, Length=601, Percent_Identity=25.7903494176373, Blast_Score=187, Evalue=2e-47, Organism=Caenorhabditis elegans, GI17533403, Length=531, Percent_Identity=26.1770244821092, Blast_Score=182, Evalue=5e-46, Organism=Saccharomyces cerevisiae, GI6323089, Length=606, Percent_Identity=24.0924092409241, Blast_Score=144, Evalue=3e-35, Organism=Drosophila melanogaster, GI21355211, Length=598, Percent_Identity=25.0836120401338, Blast_Score=180, Evalue=3e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SYFB_BORHD (B2S0L6)
Other databases:
- EMBL: CP000048 - RefSeq: YP_001883942.1 - ProteinModelPortal: B2S0L6 - EnsemblBacteria: EBBORT00000006465 - GeneID: 6276830 - GenomeReviews: CP000048_GR - KEGG: bhr:BH0514 - GeneTree: EBGT00050000007386 - HOGENOM: HBG497667 - OMA: SECCKIT - ProtClustDB: PRK09616 - BioCyc: BHER314723:BH0514-MONOMER - GO: GO:0005737 - HAMAP: MF_00284 - InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR004531 - InterPro: IPR022918 - InterPro: IPR002319 - Gene3D: G3DSA:3.30.56.20 - SMART: SM00873 - SMART: SM00874 - TIGRFAMs: TIGR00471
Pfam domain/function: PF03484 B5; PF01409 tRNA-synt_2d; SSF46955 Putativ_DNA_bind
EC number: =6.1.1.20
Molecular weight: Translated: 64397; Mature: 64266
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: PS51483 B5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKVEVYRSILLGKIGKDLTDCELVSILEMAKAEICEFYTGNDKIKIEFNDTNRPDLWSY CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCCCHHH TGLARQIKTYLFGQLPSFEFFSTADNLQKFYGEILVSPEAFSIRPFIFGFLAKGMICNEQ HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHCCCCCCHH MLETLIQLQEKLCHNYGQKRKRVAMGMYSSASIEFPVSYVTCNSDYRFIPLGMDIEMSIK HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEECCCCCHHHH EINKRHPKGIEYASILEHFTEYPLLLDYNDKVLSYPPVINSHDIGALKVGDTDLFIEVTG HHHCCCCCCCCHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCCEEEECCCEEEEEEEC TNLEATLLSLSVVACDLHDMGFEILPVKTVFPKETPFGKEIICPYYFQNTLEVSVESVNR CCHHHHHHHHHHHEEEHHHCCCEEEEEEEECCCCCCCCCCEECHHHHCCHHHHHHHHHHH MFGSNFTVNDMCLDLKKLGISAYFKELDKFYIIPPVYRNDFLHEVDVIEEIMIGRGLDSF HHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCHHHHHHHHHHHHHHCCCCCC KPELPKDFTLGKLSQIEEFSRKIKNLMIGMGFQEMIYNYLGSRTDFIEKMNIKSDEFLSV CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHH ANPMTEGYEYVRGSIVPDLLKSESISSNFPYPHKIFEIGKVALKDLSSVDGTMTYDNLAF HCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCEEE LMADKEFSFNEINSLVSSLFYYLNIEFKLRESSQTLYINGRGADILINDIILGSFGEVSP EEECCCCCHHHHHHHHHHHHHHEEEEEEEECCCCEEEEECCCCEEEEEEEEECCCCCCCC YILSNFGIMVPCCVLEINLNKILH HHHHCCCCEEEEEEEEEEHHHHCC >Mature Secondary Structure PKVEVYRSILLGKIGKDLTDCELVSILEMAKAEICEFYTGNDKIKIEFNDTNRPDLWSY CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEECCCEEEEEECCCCCCCCHHH TGLARQIKTYLFGQLPSFEFFSTADNLQKFYGEILVSPEAFSIRPFIFGFLAKGMICNEQ HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEECCCCCEEHHHHHHHHHCCCCCCHH MLETLIQLQEKLCHNYGQKRKRVAMGMYSSASIEFPVSYVTCNSDYRFIPLGMDIEMSIK HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEECCCCCHHHH EINKRHPKGIEYASILEHFTEYPLLLDYNDKVLSYPPVINSHDIGALKVGDTDLFIEVTG HHHCCCCCCCCHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCCEEEECCCEEEEEEEC TNLEATLLSLSVVACDLHDMGFEILPVKTVFPKETPFGKEIICPYYFQNTLEVSVESVNR CCHHHHHHHHHHHEEEHHHCCCEEEEEEEECCCCCCCCCCEECHHHHCCHHHHHHHHHHH MFGSNFTVNDMCLDLKKLGISAYFKELDKFYIIPPVYRNDFLHEVDVIEEIMIGRGLDSF HHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCHHHHHHHHHHHHHHCCCCCC KPELPKDFTLGKLSQIEEFSRKIKNLMIGMGFQEMIYNYLGSRTDFIEKMNIKSDEFLSV CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCCHHHHH ANPMTEGYEYVRGSIVPDLLKSESISSNFPYPHKIFEIGKVALKDLSSVDGTMTYDNLAF HCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCEEE LMADKEFSFNEINSLVSSLFYYLNIEFKLRESSQTLYINGRGADILINDIILGSFGEVSP EEECCCCCHHHHHHHHHHHHHHEEEEEEEECCCCEEEEECCCCEEEEEEEEECCCCCCCC YILSNFGIMVPCCVLEINLNKILH HHHHCCCCEEEEEEEEEEHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA