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The map label for this gene is yqxC [H]

Identifier: 187918372

GI number: 187918372

Start: 516805

End: 517596

Strand: Direct

Name: yqxC [H]

Synonym: BH0506

Alternate gene names: 187918372

Gene position: 516805-517596 (Clockwise)

Preceding gene: 187918371

Following gene: 187918374

Centisome position: 56.03

GC content: 29.17

Gene sequence:

>792_bases
TTGAAAGAATACAGAAATAGTTTATTAAATGTGCTTTGTAAAACTTATCCAAGTTTAACAAGAGAAGAACTCAGAGTTCT
AATTTTGACTGGCAGGGTGTATGTCAATTCTCATAAAGAAAGAAATCCTAAGGTTTTGCTGTTAAGAAATAGTAAAATAG
ATTTAGTAGAGAATAAATCTAGGCAGTTTGTTTCAAGAGGGGGATTTAAACTTTTTGAATCTTTAGAAACATTTAAAATT
ACACTTAAAGATAAAATCTGCATTGATGTTGGCGCTTCAACAGGTGGTTTTACGGATTGTCTTTTGCAAGAAGGTGCAAA
GTTAGTCTATGCAGTTGATGTTGGATTTAATCAACTCTCTTATAAGTTAAGAGTTGATCCGAGGGTTAGAGTTTTTGAAA
AGACTAATATTTTTGATATTCAACAATTTGACATGCAACCTAATTTAGCTGTTATTGATGTCTCTTTTAGATCTGTCGTA
AGTATATGTGCAGATTTAATTGATAGACTTTCTGATAGGCTTATCGTTGCTCTTGTTAAGCCTCAATTTGAGCTTAAAGG
ATTAGATTTAGATATAAAAGATTTTAATGGTGTAGTTGAAAATAGGTATTTAAGTGAGATATTAGAGAAGGTAATTAGAA
AATTTTATGATAATAACTTACAAATTAAAAATATTTTAAAACTTACAATCAAGGGACGGAAGGGAAATCAAGAATTTATG
TTTTTAGTTGTTAAAGATAGTTCAATAAATCTTGCGCAATCTCTTGCACTTATTGGTGATATTAATTTTTAA

Upstream 100 bases:

>100_bases
CTTGAATATGTAGCTTTACGAACAGAAACCGTTGAAGATGATGTAATTATACAGGGAGTTGTTATTACTTCTCATTTAAA
GACGGGACGTGCTTTGAAAA

Downstream 100 bases:

>100_bases
TATTTTGCGAGTTTTGTGTTATCTAGAATTCCTGAAAAGTTTAAATTTAAATCTTCAAGTATTATTGGATTGTTTTCAAT
TTTTAAGGTTATTCCATTGA

Product: putative cell adhesion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKEYRNSLLNVLCKTYPSLTREELRVLILTGRVYVNSHKERNPKVLLLRNSKIDLVENKSRQFVSRGGFKLFESLETFKI
TLKDKICIDVGASTGGFTDCLLQEGAKLVYAVDVGFNQLSYKLRVDPRVRVFEKTNIFDIQQFDMQPNLAVIDVSFRSVV
SICADLIDRLSDRLIVALVKPQFELKGLDLDIKDFNGVVENRYLSEILEKVIRKFYDNNLQIKNILKLTIKGRKGNQEFM
FLVVKDSSINLAQSLALIGDINF

Sequences:

>Translated_263_residues
MKEYRNSLLNVLCKTYPSLTREELRVLILTGRVYVNSHKERNPKVLLLRNSKIDLVENKSRQFVSRGGFKLFESLETFKI
TLKDKICIDVGASTGGFTDCLLQEGAKLVYAVDVGFNQLSYKLRVDPRVRVFEKTNIFDIQQFDMQPNLAVIDVSFRSVV
SICADLIDRLSDRLIVALVKPQFELKGLDLDIKDFNGVVENRYLSEILEKVIRKFYDNNLQIKNILKLTIKGRKGNQEFM
FLVVKDSSINLAQSLALIGDINF
>Mature_263_residues
MKEYRNSLLNVLCKTYPSLTREELRVLILTGRVYVNSHKERNPKVLLLRNSKIDLVENKSRQFVSRGGFKLFESLETFKI
TLKDKICIDVGASTGGFTDCLLQEGAKLVYAVDVGFNQLSYKLRVDPRVRVFEKTNIFDIQQFDMQPNLAVIDVSFRSVV
SICADLIDRLSDRLIVALVKPQFELKGLDLDIKDFNGVVENRYLSEILEKVIRKFYDNNLQIKNILKLTIKGRKGNQEFM
FLVVKDSSINLAQSLALIGDINF

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30164; Mature: 30164

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEYRNSLLNVLCKTYPSLTREELRVLILTGRVYVNSHKERNPKVLLLRNSKIDLVENKS
CCHHHHHHHHHHHHHCCCCCHHHEEEEEEEEEEEEECCCCCCCCEEEEECCCEEEEECCH
RQFVSRGGFKLFESLETFKITLKDKICIDVGASTGGFTDCLLQEGAKLVYAVDVGFNQLS
HHHHHCCCHHHHHCHHHEEEEEECEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCEEE
YKLRVDPRVRVFEKTNIFDIQQFDMQPNLAVIDVSFRSVVSICADLIDRLSDRLIVALVK
EEEEECCCEEEEECCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEC
PQFELKGLDLDIKDFNGVVENRYLSEILEKVIRKFYDNNLQIKNILKLTIKGRKGNQEFM
CCEEEECCEEEHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEE
FLVVKDSSINLAQSLALIGDINF
EEEEECCCCCHHHHHHHEECCCC
>Mature Secondary Structure
MKEYRNSLLNVLCKTYPSLTREELRVLILTGRVYVNSHKERNPKVLLLRNSKIDLVENKS
CCHHHHHHHHHHHHHCCCCCHHHEEEEEEEEEEEEECCCCCCCCEEEEECCCEEEEECCH
RQFVSRGGFKLFESLETFKITLKDKICIDVGASTGGFTDCLLQEGAKLVYAVDVGFNQLS
HHHHHCCCHHHHHCHHHEEEEEECEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCEEE
YKLRVDPRVRVFEKTNIFDIQQFDMQPNLAVIDVSFRSVVSICADLIDRLSDRLIVALVK
EEEEECCCEEEEECCCEEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHCCCEEEEEEC
PQFELKGLDLDIKDFNGVVENRYLSEILEKVIRKFYDNNLQIKNILKLTIKGRKGNQEFM
CCEEEECCEEEHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCEEE
FLVVKDSSINLAQSLALIGDINF
EEEEECCCCCHHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]