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The map label for this gene is ymdB [H]

Identifier: 187918371

GI number: 187918371

Start: 516012

End: 516824

Strand: Direct

Name: ymdB [H]

Synonym: BH0505

Alternate gene names: 187918371

Gene position: 516012-516824 (Clockwise)

Preceding gene: 187918370

Following gene: 187918372

Centisome position: 55.95

GC content: 31.37

Gene sequence:

>813_bases
GTGAGACTAGAGTTATTGAGTATGCAAGATAATGATGTTATTAGAGCTTTGATAATTGGAGATATCATAGGTGATGGGGG
ACTTAAAAAGATTTTTTTTAATCTTAAGAGTCTTAAAGAGAAGTACAATATAGATTTGGCAATTGTTAACGGAGAGAATT
CCTCAGGTGGCTTTGGAATTACTCCGGAGATAGCGGAAAATCTTTTTAAGGCAGGTGTAAATGTTATTACTACAGGTAAT
CATGTTTATGCAGAAAGTAGTATAAGAGAATATTTGGATAAACAAGAGTATATTTTAAGGCCAAATAATTTTTCAGATCT
ACTTGAAGGGCATGGATATTGTATTTTAAATGTTAAGAATGAAAAGGTTGCTGTTATAAACATTCAGGGATTTTTAGGAA
TGACTTTCATTGTTAAAAATCCTTTTGAAAATATAAAAAAAGTTGTAAACATGATTAGGAATAAGGTTAAGACTATTTTT
GTTGATTTTCATGCTGAGAGTAATTATGAGAAAGAAAGCTTTGGGTATTTTTTGAATGGATTGGTAACGGGGGTTGTTGG
TACACATACACATATAATGACTCAAGATGAGAGAATTCTAGACAAGGGAACTGCTTATATTAGTGATCTTGGAATGACTG
GTAGTTTAAACTCTGTAATAGGATTTAATCCTGAAATTTCTCTTAAAGGATTACTTGAATATGTAGCTTTACGAACAGAA
ACCGTTGAAGATGATGTAATTATACAGGGAGTTGTTATTACTTCTCATTTAAAGACGGGACGTGCTTTGAAAATTGAAAG
AATACAGAAATAG

Upstream 100 bases:

>100_bases
TTGGTTAATGATGAGAAAGCTACTATGCTTGCAAGAGATATTGCAAAAAAGATAGAAGTTGAGATGAGGTATCCTGGCAA
AATAAAAGTTACTATTATTC

Downstream 100 bases:

>100_bases
TTTATTAAATGTGCTTTGTAAAACTTATCCAAGTTTAACAAGAGAAGAACTCAGAGTTCTAATTTTGACTGGCAGGGTGT
ATGTCAATTCTCATAAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MRLELLSMQDNDVIRALIIGDIIGDGGLKKIFFNLKSLKEKYNIDLAIVNGENSSGGFGITPEIAENLFKAGVNVITTGN
HVYAESSIREYLDKQEYILRPNNFSDLLEGHGYCILNVKNEKVAVINIQGFLGMTFIVKNPFENIKKVVNMIRNKVKTIF
VDFHAESNYEKESFGYFLNGLVTGVVGTHTHIMTQDERILDKGTAYISDLGMTGSLNSVIGFNPEISLKGLLEYVALRTE
TVEDDVIIQGVVITSHLKTGRALKIERIQK

Sequences:

>Translated_270_residues
MRLELLSMQDNDVIRALIIGDIIGDGGLKKIFFNLKSLKEKYNIDLAIVNGENSSGGFGITPEIAENLFKAGVNVITTGN
HVYAESSIREYLDKQEYILRPNNFSDLLEGHGYCILNVKNEKVAVINIQGFLGMTFIVKNPFENIKKVVNMIRNKVKTIF
VDFHAESNYEKESFGYFLNGLVTGVVGTHTHIMTQDERILDKGTAYISDLGMTGSLNSVIGFNPEISLKGLLEYVALRTE
TVEDDVIIQGVVITSHLKTGRALKIERIQK
>Mature_270_residues
MRLELLSMQDNDVIRALIIGDIIGDGGLKKIFFNLKSLKEKYNIDLAIVNGENSSGGFGITPEIAENLFKAGVNVITTGN
HVYAESSIREYLDKQEYILRPNNFSDLLEGHGYCILNVKNEKVAVINIQGFLGMTFIVKNPFENIKKVVNMIRNKVKTIF
VDFHAESNYEKESFGYFLNGLVTGVVGTHTHIMTQDERILDKGTAYISDLGMTGSLNSVIGFNPEISLKGLLEYVALRTE
TVEDDVIIQGVVITSHLKTGRALKIERIQK

Specific function: Unknown

COG id: COG1692

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005235 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30105; Mature: 30105

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLELLSMQDNDVIRALIIGDIIGDGGLKKIFFNLKSLKEKYNIDLAIVNGENSSGGFGI
CEEEEEECCCCCCEEEEEEEHHHCCCCHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCC
TPEIAENLFKAGVNVITTGNHVYAESSIREYLDKQEYILRPNNFSDLLEGHGYCILNVKN
CHHHHHHHHHCCCEEEECCCEEEEHHHHHHHHCCCCEEECCCCHHHHHCCCCEEEEEECC
EKVAVINIQGFLGMTFIVKNPFENIKKVVNMIRNKVKTIFVDFHAESNYEKESFGYFLNG
CEEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHH
LVTGVVGTHTHIMTQDERILDKGTAYISDLGMTGSLNSVIGFNPEISLKGLLEYVALRTE
HHHHHHCCCEEEEECCHHHHHCCCHHHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHHC
TVEDDVIIQGVVITSHLKTGRALKIERIQK
CCCCCEEEEEEEEEECCCCCCEEEHHCCCC
>Mature Secondary Structure
MRLELLSMQDNDVIRALIIGDIIGDGGLKKIFFNLKSLKEKYNIDLAIVNGENSSGGFGI
CEEEEEECCCCCCEEEEEEEHHHCCCCHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCC
TPEIAENLFKAGVNVITTGNHVYAESSIREYLDKQEYILRPNNFSDLLEGHGYCILNVKN
CHHHHHHHHHCCCEEEECCCEEEEHHHHHHHHCCCCEEECCCCHHHHHCCCCEEEEEECC
EKVAVINIQGFLGMTFIVKNPFENIKKVVNMIRNKVKTIFVDFHAESNYEKESFGYFLNG
CEEEEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHH
LVTGVVGTHTHIMTQDERILDKGTAYISDLGMTGSLNSVIGFNPEISLKGLLEYVALRTE
HHHHHHCCCEEEEECCHHHHHCCCHHHHHCCCCCCCCCEECCCCCCCHHHHHHHHHHHHC
TVEDDVIIQGVVITSHLKTGRALKIERIQK
CCCCCEEEEEEEEEECCCCCCEEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]