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The map label for this gene is irpA [H]

Identifier: 187736416

GI number: 187736416

Start: 2347223

End: 2348329

Strand: Reverse

Name: irpA [H]

Synonym: Amuc_1934

Alternate gene names: 187736416

Gene position: 2348329-2347223 (Counterclockwise)

Preceding gene: 187736417

Following gene: 187736415

Centisome position: 88.15

GC content: 55.56

Gene sequence:

>1107_bases
ATGAACGCATACAAACGCATGTTGCTGGCCGGCTTTTGCGCCGGAAGTACAATCCTGGCTTTCGGTAGCCAGGCTCAGGC
GGCCAAGGCCGCTTCCCCCAAGGTGGACAAAACGAGCGCGGCGATTGCCGCCTACGCGGATGAGCTTGTCATTCCCACCT
ACAAGACGATGAGTGATAACGCTCTCAAATTCGCCAAGGCCGCTAAAGAGCTGAAGGCTGCTCCTACCGATGCCAAGGTT
GCTGAAGCAGGGAAGCTTCTTCTTGAAACGCGCGTGCCGTGGGAACTTTCAGAATCCTTCCTCTTTGGTCCGGCTGCTTT
CGCCAACCTTGACCCGAAGCTGGACTCCTGGCCCCTGGATACCACGAACCTTGACGCCGTCGCCAAAAACGCGGACAGCA
AGAGCGTAACGATTGACGCCGCCTACGTCCGCAATTCCCTCGGCGCGGAAACGCGCGGTTTCCATGCTGCCGAATACCTC
TTGTTCCGAGATGGGCAACCCCGCAAGGCCGCCGATCTGACGCCCGGACAGCTTTCCTACCTTGCCGCTGTGGCCGAGGT
GATTGCAGAGGATGCCATCACGCTTGAAGCCTGGTGGGCGGGTTCTGACAAGATCAGCGAAGAGAAGGCCAAGATTCTTG
AAGAAGCTGAAATAGAACCCGGCAAGTCCTATGCGGGGGAATTCAAAAAAGCTGGCCAGGCAGGCAGCCGCTACGAGTCA
AACTCTGAAGTGCTTGATGAAATCATCGGCGGCAGCAAGGACATTATTGACGAAATAGCCGATTCAAAGGTGGGCAAGCC
CTACGAAACGGCTGACGCCGCCGACTGTGAATCCCTTTACAGCTACACTTCTCTGGTGGACTCCCGCCACAACGTACAGA
GCGTAGAAAAATCCTACAATGCGATTTCCCCTCTCGTAGCCGCCAAGTCCGCGAAGGTTGGCCAGGCTGTGAAAGGTTCT
ATCGCCAAGGTATTCAAGAGCCTCGACGCCATACAGGGCCCCCTGGTGAAAAACCTCGACAAAAAGGAGCAGCTCAAGGC
AATCATCGACAGTTGCAAGGAACTTTCCGAAAACCTCGACAAGGTTCAGGAACTTCTTGTGAAGTAA

Upstream 100 bases:

>100_bases
CTCCGGCGGGAAAAAATGGCGGATATGCCATGAAATCCTGCCGGATTGGAGGATGCCTCCCTGAGGAGGATACGGATGTT
TTCATTATCAATAAAAAACC

Downstream 100 bases:

>100_bases
TTTAACACGCATTGCCCAGGGTCGGAAAGACCCTGGGCTGCAATATCCATATTGTCGGCCGGCTGACGGAGACATGTACC
ACGGGCCGTATTTCTGGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MNAYKRMLLAGFCAGSTILAFGSQAQAAKAASPKVDKTSAAIAAYADELVIPTYKTMSDNALKFAKAAKELKAAPTDAKV
AEAGKLLLETRVPWELSESFLFGPAAFANLDPKLDSWPLDTTNLDAVAKNADSKSVTIDAAYVRNSLGAETRGFHAAEYL
LFRDGQPRKAADLTPGQLSYLAAVAEVIAEDAITLEAWWAGSDKISEEKAKILEEAEIEPGKSYAGEFKKAGQAGSRYES
NSEVLDEIIGGSKDIIDEIADSKVGKPYETADAADCESLYSYTSLVDSRHNVQSVEKSYNAISPLVAAKSAKVGQAVKGS
IAKVFKSLDAIQGPLVKNLDKKEQLKAIIDSCKELSENLDKVQELLVK

Sequences:

>Translated_368_residues
MNAYKRMLLAGFCAGSTILAFGSQAQAAKAASPKVDKTSAAIAAYADELVIPTYKTMSDNALKFAKAAKELKAAPTDAKV
AEAGKLLLETRVPWELSESFLFGPAAFANLDPKLDSWPLDTTNLDAVAKNADSKSVTIDAAYVRNSLGAETRGFHAAEYL
LFRDGQPRKAADLTPGQLSYLAAVAEVIAEDAITLEAWWAGSDKISEEKAKILEEAEIEPGKSYAGEFKKAGQAGSRYES
NSEVLDEIIGGSKDIIDEIADSKVGKPYETADAADCESLYSYTSLVDSRHNVQSVEKSYNAISPLVAAKSAKVGQAVKGS
IAKVFKSLDAIQGPLVKNLDKKEQLKAIIDSCKELSENLDKVQELLVK
>Mature_368_residues
MNAYKRMLLAGFCAGSTILAFGSQAQAAKAASPKVDKTSAAIAAYADELVIPTYKTMSDNALKFAKAAKELKAAPTDAKV
AEAGKLLLETRVPWELSESFLFGPAAFANLDPKLDSWPLDTTNLDAVAKNADSKSVTIDAAYVRNSLGAETRGFHAAEYL
LFRDGQPRKAADLTPGQLSYLAAVAEVIAEDAITLEAWWAGSDKISEEKAKILEEAEIEPGKSYAGEFKKAGQAGSRYES
NSEVLDEIIGGSKDIIDEIADSKVGKPYETADAADCESLYSYTSLVDSRHNVQSVEKSYNAISPLVAAKSAKVGQAVKGS
IAKVFKSLDAIQGPLVKNLDKKEQLKAIIDSCKELSENLDKVQELLVK

Specific function: IrpA occurs under iron-deficient growth conditions in cyanobacterium Synechococcus and disappears in cells recovering from iron starvation. It seems to be involved in iron acquisition, uptake or storage [H]

COG id: COG3487

COG function: function code P; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cell inner membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 39383; Mature: 39383

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAYKRMLLAGFCAGSTILAFGSQAQAAKAASPKVDKTSAAIAAYADELVIPTYKTMSDN
CCHHHHHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCH
ALKFAKAAKELKAAPTDAKVAEAGKLLLETRVPWELSESFLFGPAAFANLDPKLDSWPLD
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHEECCHHHCCCCCCCCCCCCC
TTNLDAVAKNADSKSVTIDAAYVRNSLGAETRGFHAAEYLLFRDGQPRKAADLTPGQLSY
CCCHHHHHHCCCCCEEEEEHHHHHHHCCCCCCCCHHHHHHEECCCCCCCCCCCCCHHHHH
LAAVAEVIAEDAITLEAWWAGSDKISEEKAKILEEAEIEPGKSYAGEFKKAGQAGSRYES
HHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
NSEVLDEIIGGSKDIIDEIADSKVGKPYETADAADCESLYSYTSLVDSRHNVQSVEKSYN
HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AISPLVAAKSAKVGQAVKGSIAKVFKSLDAIQGPLVKNLDKKEQLKAIIDSCKELSENLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
KVQELLVK
HHHHHHCC
>Mature Secondary Structure
MNAYKRMLLAGFCAGSTILAFGSQAQAAKAASPKVDKTSAAIAAYADELVIPTYKTMSDN
CCHHHHHHHHHHHCCCHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCH
ALKFAKAAKELKAAPTDAKVAEAGKLLLETRVPWELSESFLFGPAAFANLDPKLDSWPLD
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHEECCHHHCCCCCCCCCCCCC
TTNLDAVAKNADSKSVTIDAAYVRNSLGAETRGFHAAEYLLFRDGQPRKAADLTPGQLSY
CCCHHHHHHCCCCCEEEEEHHHHHHHCCCCCCCCHHHHHHEECCCCCCCCCCCCCHHHHH
LAAVAEVIAEDAITLEAWWAGSDKISEEKAKILEEAEIEPGKSYAGEFKKAGQAGSRYES
HHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCC
NSEVLDEIIGGSKDIIDEIADSKVGKPYETADAADCESLYSYTSLVDSRHNVQSVEKSYN
HHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AISPLVAAKSAKVGQAVKGSIAKVFKSLDAIQGPLVKNLDKKEQLKAIIDSCKELSENLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHH
KVQELLVK
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3139627 [H]