Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736415
Identifier: 187736415
GI number: 187736415
Start: 2345449
End: 2346867
Strand: Reverse
Name: 187736415
Synonym: Amuc_1933
Alternate gene names: NA
Gene position: 2346867-2345449 (Counterclockwise)
Preceding gene: 187736416
Following gene: 187736414
Centisome position: 88.09
GC content: 55.81
Gene sequence:
>1419_bases ATGACAGCTTCATGCGTGAGCTGCCATGTAAACCGCGGCCGTGATTTCACGCCCCCCGTCCTCAGGACGAAAGAAGGCGA GCCCGGGCCGGCTTACTATCTGGGCGGTGAAAAGGGAACGGTGTTTAATGCCACCAGTAAAGCGTTTGAGCAGGAATCGC CGGCAATTACTGAAGCCGGCCTGACGAATCGTTTCAAGGCGGGCGAAATTATTTTTGAAGGGAACTTCGTACCCGTGAAG CGCAATCGCTTCGGCGGTCTCGGCCCCACTTACATTAAGTCATCCTGTCTGGCCTGCCACCCCGGTTATGGCCGCGGACA GCGCACCGGCAATTTTGACAGGCAGTACGGCAACGGTTATCTGGCCTTTGTACATAATCCCGATGGCACCCCAGTTAAGG GGTACACGGGCATGCTGCAGACGAAAGCGGTTCCTCCTTTTGTGCCTTATGCCAAGGGGGTGAAAATAGAATGGCATGAT TTTGTTGACCAGTACGGAAACAAATACCCGGACGGAACGCCCTACAATGCGGGCAAGCCGACGGAAGGCACGTTGACTTA TCCCACGGCAGATGTGATTGAGCCGTTGCTTCCGCTTCCGGCCGATTACCGCGTGTCAATCGAATCAACAATCGGCATTT ACGGAACGGGGCTGCTTGATGCCATCCGTGACGAGGATATTATTGCCGAATACAGGCGCCAGCAGAGCATGACAGGCCCG GTGAAGGGGATTCCTGGCAAATGGATTGACGAGCCCGACGGTACCCGGCGCCTCGGAAAGTTCACGTGGGACTGCTCGCG CGCCACACTGGAAAACGGTCCTGGCGCCAATGCGCTTTGGAACGTGACGAATGTAACGCGCAAGAACCGTCCGAACATCT ACATGACGCCCGAATGGCTCGAAAAACAGAAGGAACTTGGCATTGATGTAAGCGGTCTTGAAGGCCCGCAGGAAGAGGAA CTCTCAATGCAGCAGTATGAAGATTTCATGGTCTGGCATCGCGGGCTAGCCGTGCCTGCCGCCCGCAACCTGGACAAGCC TGACGTGCGCCGCGGACAGGAACTCTTCAATAAACTGGGGTGTGCCGGTTGCCACAAGCCTGAATGGACAACGGGGGAAT ATAAGCCGCTTCCCGGTTATGCAAACCAGACCATCCGCCCCTATACGGATATGCTGCGTCACGATATGGGGGAAATCAAC CGCGGACGTTCTCGTTTCTGGCGTACGCCGCCCCTCTGGGGAAGGGGGCTGATGCACAAAACCGCCAATCATACAGATAT GTTCCATGACCTGCGCGCCCGCGACTTTGAAGAGGCTATCCTGTGGCATTTCGGTGAAAGCGAATTCTCCCGTGAAATGT TCCGCCATCTCTCCGCCGAAGAGCGCGGCCAACTGATTCAATTCCTGAAAGCACTTTAA
Upstream 100 bases:
>100_bases GAATGCCGGCGTTTTGGGACATCCCCGTATTTCCGGACGCGCACTGATTAATCCGGCCCAGGGGAGTGCATCAAAATTTG ACAATATCAAAGCCGAATAC
Downstream 100 bases:
>100_bases AAAAATAATATACTCATGACCTGCAACTTGGAAAAAAACAAAGGTGTTTCCGTCAAGTCGCTCCCGCTGGGCGGCGAAGG CGCATCTCTGCAATTCGTTA
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein; Thiol Oxidoreductase-Like; Exported Protein; Signal Peptide
Number of amino acids: Translated: 472; Mature: 471
Protein sequence:
>472_residues MTASCVSCHVNRGRDFTPPVLRTKEGEPGPAYYLGGEKGTVFNATSKAFEQESPAITEAGLTNRFKAGEIIFEGNFVPVK RNRFGGLGPTYIKSSCLACHPGYGRGQRTGNFDRQYGNGYLAFVHNPDGTPVKGYTGMLQTKAVPPFVPYAKGVKIEWHD FVDQYGNKYPDGTPYNAGKPTEGTLTYPTADVIEPLLPLPADYRVSIESTIGIYGTGLLDAIRDEDIIAEYRRQQSMTGP VKGIPGKWIDEPDGTRRLGKFTWDCSRATLENGPGANALWNVTNVTRKNRPNIYMTPEWLEKQKELGIDVSGLEGPQEEE LSMQQYEDFMVWHRGLAVPAARNLDKPDVRRGQELFNKLGCAGCHKPEWTTGEYKPLPGYANQTIRPYTDMLRHDMGEIN RGRSRFWRTPPLWGRGLMHKTANHTDMFHDLRARDFEEAILWHFGESEFSREMFRHLSAEERGQLIQFLKAL
Sequences:
>Translated_472_residues MTASCVSCHVNRGRDFTPPVLRTKEGEPGPAYYLGGEKGTVFNATSKAFEQESPAITEAGLTNRFKAGEIIFEGNFVPVK RNRFGGLGPTYIKSSCLACHPGYGRGQRTGNFDRQYGNGYLAFVHNPDGTPVKGYTGMLQTKAVPPFVPYAKGVKIEWHD FVDQYGNKYPDGTPYNAGKPTEGTLTYPTADVIEPLLPLPADYRVSIESTIGIYGTGLLDAIRDEDIIAEYRRQQSMTGP VKGIPGKWIDEPDGTRRLGKFTWDCSRATLENGPGANALWNVTNVTRKNRPNIYMTPEWLEKQKELGIDVSGLEGPQEEE LSMQQYEDFMVWHRGLAVPAARNLDKPDVRRGQELFNKLGCAGCHKPEWTTGEYKPLPGYANQTIRPYTDMLRHDMGEIN RGRSRFWRTPPLWGRGLMHKTANHTDMFHDLRARDFEEAILWHFGESEFSREMFRHLSAEERGQLIQFLKAL >Mature_471_residues TASCVSCHVNRGRDFTPPVLRTKEGEPGPAYYLGGEKGTVFNATSKAFEQESPAITEAGLTNRFKAGEIIFEGNFVPVKR NRFGGLGPTYIKSSCLACHPGYGRGQRTGNFDRQYGNGYLAFVHNPDGTPVKGYTGMLQTKAVPPFVPYAKGVKIEWHDF VDQYGNKYPDGTPYNAGKPTEGTLTYPTADVIEPLLPLPADYRVSIESTIGIYGTGLLDAIRDEDIIAEYRRQQSMTGPV KGIPGKWIDEPDGTRRLGKFTWDCSRATLENGPGANALWNVTNVTRKNRPNIYMTPEWLEKQKELGIDVSGLEGPQEEEL SMQQYEDFMVWHRGLAVPAARNLDKPDVRRGQELFNKLGCAGCHKPEWTTGEYKPLPGYANQTIRPYTDMLRHDMGEINR GRSRFWRTPPLWGRGLMHKTANHTDMFHDLRARDFEEAILWHFGESEFSREMFRHLSAEERGQLIQFLKAL
Specific function: Unknown
COG id: COG3488
COG function: function code C; Predicted thiol oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53209; Mature: 53077
Theoretical pI: Translated: 7.59; Mature: 7.59
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASCVSCHVNRGRDFTPPVLRTKEGEPGPAYYLGGEKGTVFNATSKAFEQESPAITEAG CCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCHHHHHHHCCCCHHHCC LTNRFKAGEIIFEGNFVPVKRNRFGGLGPTYIKSSCLACHPGYGRGQRTGNFDRQYGNGY CCCCCCCCEEEECCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCCCCCHHCCCEE LAFVHNPDGTPVKGYTGMLQTKAVPPFVPYAKGVKIEWHDFVDQYGNKYPDGTPYNAGKP EEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCCC TEGTLTYPTADVIEPLLPLPADYRVSIESTIGIYGTGLLDAIRDEDIIAEYRRQQSMTGP CCCEEECCCHHHHHHHHCCCCCCEEEEECCCCEEEHHHHHHHCCHHHHHHHHHHHCCCCC VKGIPGKWIDEPDGTRRLGKFTWDCSRATLENGPGANALWNVTNVTRKNRPNIYMTPEWL CCCCCCCCCCCCCCCHHHHCEEECCCHHHHCCCCCCCCEEECHHHHHCCCCCEEECHHHH EKQKELGIDVSGLEGPQEEELSMQQYEDFMVWHRGLAVPAARNLDKPDVRRGQELFNKLG HHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHC CAGCHKPEWTTGEYKPLPGYANQTIRPYTDMLRHDMGEINRGRSRFWRTPPLWGRGLMHK CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHH TANHTDMFHDLRARDFEEAILWHFGESEFSREMFRHLSAEERGQLIQFLKAL CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCC >Mature Secondary Structure TASCVSCHVNRGRDFTPPVLRTKEGEPGPAYYLGGEKGTVFNATSKAFEQESPAITEAG CCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEECCHHHHHHHCCCCHHHCC LTNRFKAGEIIFEGNFVPVKRNRFGGLGPTYIKSSCLACHPGYGRGQRTGNFDRQYGNGY CCCCCCCCEEEECCCEEEECCCCCCCCCHHHHHCCCEEECCCCCCCCCCCCCCHHCCCEE LAFVHNPDGTPVKGYTGMLQTKAVPPFVPYAKGVKIEWHDFVDQYGNKYPDGTPYNAGKP EEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCCCCCCC TEGTLTYPTADVIEPLLPLPADYRVSIESTIGIYGTGLLDAIRDEDIIAEYRRQQSMTGP CCCEEECCCHHHHHHHHCCCCCCEEEEECCCCEEEHHHHHHHCCHHHHHHHHHHHCCCCC VKGIPGKWIDEPDGTRRLGKFTWDCSRATLENGPGANALWNVTNVTRKNRPNIYMTPEWL CCCCCCCCCCCCCCCHHHHCEEECCCHHHHCCCCCCCCEEECHHHHHCCCCCEEECHHHH EKQKELGIDVSGLEGPQEEELSMQQYEDFMVWHRGLAVPAARNLDKPDVRRGQELFNKLG HHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHC CAGCHKPEWTTGEYKPLPGYANQTIRPYTDMLRHDMGEINRGRSRFWRTPPLWGRGLMHK CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCHHHH TANHTDMFHDLRARDFEEAILWHFGESEFSREMFRHLSAEERGQLIQFLKAL CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA